Job Description P39387 Confidence 28.74% Date Thu Jan 5 12:00:19 GMT 2012 Rank 49 Aligned Residues 87 % Identity 10% Template c3mzyA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a Resolution 2.50 Å

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		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		L	L	N	Y	I	L	L	T	G	D	E	A	R	F	N	E	F	I	S	E	L	T	R	R	M	P	Q	H	R	E	R	I	M	T	I	A	E	R	I	H	N	D	G	Y	I	K	G	E	Q	R	I	L	R	L	L	L	Q	N	G	A	D	P	E	W	I	Q	K	I	T	G	L	S	A	E	Q	M	Q	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																																															.	.	.
Template Conservation
Template Sequence		F	S	S	F	A	F	L	C	I	R	R	E	X	I	S	A	I	R	K	A	N	T	Q	K	E	E	A	Y	L	L	K	E	E	I	E	E	F	K	K	F	S	E	N	N	F	S	K	F	E	K	E	V	L	T	Y	L	I	R	G	Y	S	Y	R	E	I	A	T	I	L	S	K	N	L	K	S	I	D	N	T	I
Template Known Secondary structure																																														S												T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
							290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	A	L	R	Q	P	L	P	E	R	E
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		Q	R	I	R	K	K	S	E	E	W	I	K	E	E	E
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions