Return to main results Retrieve Phyre Job Id

Job DescriptionP77504
Confidence43.44%DateThu Jan 5 12:30:05 GMT 2012
Rank15Aligned Residues230
% Identity14%Templatec3k07A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:cation efflux system protein cusa; PDBTitle: crystal structure of cusa
Resolution3.52 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   204.....210.........220.........230.........240.........250.........260.........270.........280...
Predicted Secondary structure 






Query SS confidence 















































































Query Sequence  NQLDGYEKWLLPQLKPEQRWYGLEQDEGALGRSMERSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAG
Query Conservation                                                  
      
          
  
 


  

 
Alig confidence 



























































....................
Template Conservation    
           
 
       
    
   
  
    
    

 


 
 

  
....................
Template Sequence  AAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDNLSGKLLEEFIVVAVVCALFLWHVR. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GGGS
TTT

....................
Template Predicted Secondary structure 







....................
Template SS confidence 















































































   302.......310.........320.........330.........340.........350.........360.
 
   284.....290.........300.........310.........320.........330.........340.........350.........360
Predicted Secondary structure 








...
Query SS confidence 












































































. . .
Query Sequence  RAQLRKLIVGQWLMVLTLSAVTGGAIGLLFENVLMVLLKPVLPAALPPASLWPWLWALGTMTVISLLVGLRPYRLLL. . .
Query Conservation    

      
   
      

  

                                       
          ...
Alig confidence  ...........






















........


































...
Template Conservation  ...........  

    

 
   

      ........
  

 


  
 
 


 






 
 
        
Template Sequence  . . . . . . . . . . . SALVAIISLPLGLCIAFIVMHFQ. . . . . . . . GLNANIMSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQ
Template Known Secondary structure  ...........T........T



Template Predicted Secondary structure  ...................





Template SS confidence 















































































   362.......370.........380.... .....390.........400.........410.........420..
 
   361........370.........380.........390.........400.........410.........420.........430.
Predicted Secondary structure  .........



















Query SS confidence  . . . . . . . . .






































































Query Sequence  . . . . . . . . . ATQPLRVLRNDVVANVWPLKFYLPIVSVVVVLLLAGLMGGSMLLWAVLAGAVVLALLCGVLGWMLLNVLRR
Query Conservation  .........       

                                                              
Alig confidence  .........






































































Template Conservation           
     
   
   
   

 




  

 

          
          
  
 




  


  
Template Sequence  HQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMG
Template Known Secondary structure  S
SS


SGGGGG

T
Template Predicted Secondary structure 










Template SS confidence 















































































   423......430.........440.........450.........460.........470.........480.........490.........500..
 
   432.......440.........450.........460.........470..
Predicted Secondary structure 







Query SS confidence 








































Query Sequence  MTLKSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLV
Query Conservation                                           
Alig confidence 








































Template Conservation                                           
Template Sequence  YWPLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPL
Template Known Secondary structure 


TT
Template Predicted Secondary structure 






Template SS confidence 








































   503......510.........520.........530.........540...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions