Job Description P77504 Confidence 98.70% Date Thu Jan 5 12:30:05 GMT 2012 Rank 2 Aligned Residues 159 % Identity 12% Template c3is6A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative permease protein, abc transporter; PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a Resolution 1.95 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																.																																	.	.	.
Query SS confidence																																.																																	.	.	.
Query Sequence		R	S	S	R	E	V	P	Q	A	W	L	E	E	A	Q	K	R	G	L	K	V	G	K	Q	L	T	F	A	T	M	.	T	F	A	G	D	T	P	Q	L	A	N	V	K	A	V	D	D	I	Y	P	M	Y	G	D	L	Q	T	N	P	P	G	L	.	.	.	K	P	Q	A	G	S	V	L	L	A	P	R	L	M
Query Conservation																																.																																	.	.	.
Alig confidence																																.																																	.	.	.
Template Conservation
Template Sequence		Q	V	S	G	G	V	A	P	A	I	Q	E	E	I	P	G	V	E	L	A	T	R	T	T	L	Y	G	T	S	K	X	I	L	E	D	N	K	T	Y	E	T	K	T	L	L	A	E	P	A	F	L	D	X	F	G	V	E	L	I	A	G	V	R	D	S	A	L	R	D	N	X	T	C	L	I	S	E	S	L	A
Template Known Secondary structure			B		T	T										T	T																		T	T	T												T						T	T								G	G	G	T	T		S	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		134	.	.		.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure					.											.	.	.	.
Query SS confidence					.											.	.	.	.
Query Sequence		A	L	L	.	N	L	K	T	G	D	T	I	D	V	.	.	.	.	G	D	A	T	L	R	I	A	G	E	V	I	Q	E	P	D	S	G	F	N	P	F	Q	M	A	P	R	L	M	M	N	L	A	D	V	D	K	T	G	A	V	Q	P	G	S	R	V	T	W	R	Y	K	F	G	G	N	E	N	Q	L	D	G
Query Conservation					.											.	.	.	.
Alig confidence					.											.	.	.	.
Template Conservation
Template Sequence		R	K	X	G	G	D	V	L	G	K	R	L	R	P	A	E	S	K	S	D	R	A	I	T	I	G	G	V	F	E	D	L	P	H	N	S	S	I	Q	A	D	X	L	L	P	I	T	W	X	P	A	E	S	L	N	N	W	I	G	N	D	R	Y	I	A	Y	V	R	L	R	P	G	V	S	P	E	S	L	D	E
Template Known Secondary structure				T	T	S			T	T						T	T			S	S														S	S	B	S				S					G	G	G	S						T			S	S				B								T	T			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		209	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	K	W	L	L	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	L	E	X	Q	K	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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