Job Description P0A6A0 Confidence 99.65% Date Thu Jan 5 11:02:40 GMT 2012 Rank 185 Aligned Residues 258 % Identity 13% Template c3rgfA_ PDB info PDB header:transferase,transcription Chain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc Resolution 2.20 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		L	A	S	A	S	I	A	Q	V	H	T	A	R	L	K	.	.	S	N	G	K	E	V	V	I	K	V	I	R	P	D	I	L	P	V	I	K	A	D	L	K	L	I	Y	R	L	A	R	W	V	P	R	L	L	P	D	G	R	R	L	R	P	T	E	V	V	R	E	Y	E	K	T	L	I	D	E	L	N	L	L
Query Conservation																	.	.
Alig confidence																	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	E	G	C	K	V	G	H	V	Y	K	A	K	R	K	D	G	K	D	D	K	D	Y	A	L	K	Q	I	E	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	S	M	S	A	C	R	E	I	A	L	L	R	E	L	K	H	P	N	V	I	S	L	Q	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S												S	S	S	S											S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	S																		T	T	B						.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.														.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.
Predicted Secondary structure																											.	.																																											.	.
Query SS confidence																											.	.																																											.	.
Query Sequence		R	E	S	A	N	A	I	Q	L	R	R	N	F	E	D	S	P	M	L	Y	I	P	E	V	Y	.	.	P	D	Y	C	S	E	G	M	M	V	M	E	R	I	Y	G	I	P	V	S	D	V	A	A	L	E	K	N	G	T	N	M	K	L	L	A	E	R	G	V	Q	V	.	.	F	F	T	Q	V	F	R	D	S
Query Conservation																											.	.																																											.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		.	.																																											.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	L	S	H	A	D	R	K	V	W	L	L	F	D	Y	A	E	H	D	L	W	H	I	I	K	F	H	R	A	S	K	L	P	R	G	M	V	K	S	L	L	Y	Q	I	L	D	G	I	H	Y	L	H	A	N	W
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	T										S																																					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																										84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	H	A	D	M	H	P	G	N	I	F	V	S	Y	E	H	P	E	N	P	K	Y	I	G	I	D	C	G	I	V	G	S	L	N	K	E	D	K	R	Y	L	A	E	N	F	I	A	F	F	N	R	D	Y	R	K	V	A	E	L	H	V	D	S	G	W	V	P	P	D	T	N	V	E	E	F	E	F	A	I
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	H	R	D	L	K	P	A	N	I	L	V	M	G	E	G	P	E	R	G	R	V	K	I	A	D	M	G	F	A	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	W	Y	R	A	P	E	L	L	L	G	A	R	H	Y	T	K	A	I	D	I	W	A	I	G	C	I	F
Template Known Secondary structure									G	G	G						S	S	T	T	T	T							T	T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T							T	T			S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.																			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.												.	.	.	.	.	.	430	.
Predicted Secondary structure																	.																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	V	C	E	P	I	F	E	K	P	L	A	E	I	.	S	F	G	H	V	L	L	N	L	F	N	T	A	R	R	F	N	M	E	V	Q	P	Q	L	V	L	L	Q	K	T	L	L	Y	V	E	G	V	G	R	Q	L	Y	P	Q	L	.	.	.	.	.	.	.	.	.	.	.	D	L	W	K	T	A	K	P
Query Conservation																	.																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	L	L	T	S	E	P	I	F	H	C	R	Q	N	P	Y	H	H	D	Q	L	D	R	I	F	N	V	M	G	F	P	A	D	K	D	W	E	D	I	K	K	M	P	E	H	S	T	L	M	K	D	F	R	R	N	T	Y	T	N	C	S	L	I	K	Y	M	E	K	H	K	V	K	P	D	S	K	A	F	H
Template Known Secondary structure							S	S		T	T																								T	T	T		G	G	G	G	G	S	T	T										G	G	G	G	T	T									T	T	T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	E	S	W	I	K	D	Q	V	G	I	P	A	L	V	R	A	F	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	Q	K	L	L	T	M	D	P	I	K	R	I	T	S	E	Q	A	M	Q
Template Known Secondary structure							S		S	S	G	G	G	S								T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions