Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6A0
Confidence24.01%DateThu Jan 5 11:02:40 GMT 2012
Rank314Aligned Residues96
% Identity8%Templatec3k3pA_
PDB info PDB header:ligaseChain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: crystal structure of the apo form of d-alanine:d-alanine ligase (ddl)2 from streptococcus mutans
Resolution2.23 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   237..240.........250.........260 .........270.........280.........290........
Predicted Secondary structure 










..................









Query SS confidence 























. . . . . . . . . . . . . . . . . .





































Query Sequence  SEGMMVMERIYGIPVSDVAALEKN. . . . . . . . . . . . . . . . . . GTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSY
Query Conservation     




 
 
  
         ..................      
        
      
  


 






  
Alig confidence 























..................



























.....



.
Template Conservation       

  
 
 
  
 
                              
   
      

  
   

.....   
.
Template Sequence  DSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVTMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCD. . . . . FFLT.
Template Known Secondary structure 
S


SSSS





SS



TT

.....
.
Template Predicted Secondary structure 
























.....
.
Template SS confidence 















































































   203......210.........220.........230.........240.........250.........260.........270.. ....
 
   299300.........310.........320.........330.........340......
Predicted Secondary structure 















Query SS confidence 















































Query Sequence  EHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVD
Query Conservation      

 
 




    
    
             
          
Alig confidence  ...
















.....






















Template Conservation  ...  
   




  

  .....          
     

  

 
Template Sequence  . . . EDGKVYLNELNTMPGFT. . . . . SMYPLLWENMGLSYSVLIEELVS
Template Known Secondary structure  ...TT

SS



.....
TT

Template Predicted Secondary structure  ...









.....



Template SS confidence 















































   294.....300.........310 .........320.........330...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions