Job Description P0A6A0 Confidence 99.85% Date Thu Jan 5 11:02:40 GMT 2012 Rank 55 Aligned Residues 254 % Identity 15% Template c2ivsA_ PDB info PDB header:transferase Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase receptor PDBTitle: crystal structure of non-phosphorylated ret tyrosine kinase2 domain Resolution 2.00 Å

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		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		K	P	L	A	S	A	S	I	A	Q	V	H	T	A	R	L	K	.	.	.	.	.	S	N	G	K	E	V	V	I	K	V	I	R	P	D	I	L	P	V	I	K	A	D	L	K	L	I	Y	R	L	A	R	W	V	P	R	L	L	P	D	G	R	R	L	R	P	T	E	V	V	R	E	Y	E	K	T	L	I	D
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Sequence		K	T	L	G	E	G	E	F	G	K	V	V	K	A	T	A	F	H	L	K	G	R	A	G	Y	T	T	V	A	V	K	M	L	K	E	N	A	S	P	S	.	.	.	.	.	.	.	.	.	.	E	L	R	D	L	L	S	E	F	N	V	L	K	Q	V	N	H	P	H	V	I	K	L	Y	G	.	.	.	.	.
Template Known Secondary structure								S	S	S									T	G	G	G		S	S											T	T					.	.	.	.	.	.	.	.	.	.													T	T				T	T	B						.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template SS confidence
		728	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.											.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.										260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.
Query Sequence		E	L	N	L	L	R	E	S	A	N	A	I	Q	L	R	R	N	F	E	D	S	P	M	L	Y	I	P	E	V	Y	P	D	Y	C	S	E	G	M	M	V	M	E	R	I	Y	G	I	P	V	S	D	V	A	A	L	E	K	.	.	.	.	.	.	.	.	.	N	G	T	N	M	K	L	L	A	E	R	G	V	Q
Query Conservation																																																											.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	S	Q	D	G	P	L	L	L	I	V	E	Y	A	K	Y	G	S	L	R	G	F	L	R	E	S	R	K	V	G	P	G	Y	L	R	A	L	T	M	G	D	L	I	S	F	A	W	Q	I	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S	S									T	T		B								T	T	T	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															793	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	F	T	Q	V	F	R	D	S	F	F	H	A	D	M	H	P	G	N	I	F	V	S	Y	E	H	P	E	N	P	K	Y	I	G	I	D	C	G	I	V	G	S	L	N	K	E	D	K	R	Y	L	A	E	N	F	I	A	F	F	N	R	D	Y	R	K	V	A	E	L	H	V	D	S	G	W	V	P	P	D
Query Conservation
Alig confidence																										.	.	.	.																										.	.	.	.
Template Conservation																										.	.	.	.																										.	.	.	.
Template Sequence		Q	G	M	Q	Y	L	A	E	M	K	L	V	H	R	D	L	A	A	R	N	I	L	V	A	.	.	.	.	E	G	R	K	M	K	I	S	D	F	G	L	S	R	D	V	Y	E	E	D	S	Y	V	K	R	.	.	.	.	S	Q	G	R	I	P	V	K	W	M	A	I	E	S	L	F	D	H	I	Y	T	T	Q
Template Known Secondary structure										T	T							S	G	G	G					.	.	.	.	T	T	T								T	T					T	T	T	S					S	.	.	.	.	S				S		G	G	G
Template Predicted Secondary structure																										.	.	.	.																										.	.	.	.
Template SS confidence
		860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.					.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.					.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		T	N	V	E	E	F	E	F	A	I	R	T	V	C	E	P	I	F	E	K	P	L	A	E	I	S	F	G	H	V	L	L	N	L	F	N	T	A	R	R	F	N	M	E	V	Q	P	Q	L	V	L	L	Q	K	T	L	L	Y	V	E	G	V	G	R	Q	L	Y	P	Q	L	D	L	.	W	K	T	A	K	P	F
Query Conservation																																																																										.
Alig confidence																		.																				.	.	.																					.	.	.											.
Template Conservation																		.																				.	.	.																					.	.	.
Template Sequence		S	D	V	W	S	F	G	V	L	L	W	E	I	V	T	L	.	G	G	N	P	Y	P	G	I	P	P	E	R	L	F	N	L	L	K	T	.	.	.	G	H	R	M	E	R	P	D	N	C	S	E	E	M	Y	R	L	M	L	Q	.	.	.	C	W	K	Q	E	P	D	K	R	P	V	F	A	D	I	S	K	D
Template Known Secondary structure																T	T	.	S			S	S	T	T			G	G	G							T	.	.	.	T							T	T												.	.	.		T		S	S	G	G	G	S
Template Predicted Secondary structure																		.																				.	.	.																					.	.	.
Template SS confidence
		932	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.		.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.				.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.				.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.
		433	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	S	W	I	K	D	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	K	M	M	V	K	R
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		1005	.	.	.	.	1010	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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