Job Description P37631 Confidence 99.91% Date Thu Jan 5 11:56:04 GMT 2012 Rank 21 Aligned Residues 383 % Identity 15% Template c3nlcA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vp0956; PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147 Resolution 2.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.
Query Sequence		R	F	D	A	I	I	I	G	A	G	A	A	G	M	F	C	S	A	L	A	G	Q	A	G	R	R	V	L	L	I	D	N	G	K	K	P	G	R	K	I	L	M	S	G	G	G	.	.	.	.	.	.	.	R	C	N	F	T	N	L	Y	V	E	P	G	A	Y	L	S	Q	N	P	H	F	C	K	S	A	L	A
Query Conservation																																																.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	R	P	I	V	I	G	F	G	P	C	G	L	F	A	G	L	V	L	A	Q	X	G	F	N	P	I	I	V	E	R	G	K	E	V	R	E	R	T	K	D	T	F	G	F	W	R	K	R	T	L	N	P	E	S	N	V	Q	F	G	E	G	G	A	G	T	F	S	D	G	K	L	Y	S	Q	V	K	D	P
Template Known Secondary structure											S													T	T								S	S																					T	T	S	S	S	S	S	S	T	T	G	G	G	T	T	S								S			T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																									.																																													.	.
Query SS confidence																									.																																													.	.
Query Sequence		R	F	T	Q	W	D	F	I	D	L	V	N	K	H	G	I	A	W	H	E	K	T	L	.	G	Q	L	F	C	D	D	S	A	Q	Q	I	V	D	M	L	V	D	E	C	E	K	G	N	V	T	F	R	L	R	S	E	V	L	S	V	A	K	D	E	T	G	F	T	.	.	L	D	L	N	G	M	T	V	G	C
Query Conservation																									.																																													.	.
Alig confidence																									.																																													.	.
Template Conservation
Template Sequence		N	F	Y	G	R	K	V	I	T	E	F	V	E	A	G	A	P	E	E	I	L	Y	V	S	K	P	H	I	G	T	F	K	L	V	T	X	I	E	K	X	R	A	T	I	I	E	L	G	G	E	I	R	F	S	T	R	V	D	D	L	H	X	E	D	G	Q	I	T	G	V	T	L	S	N	G	E	E	I	K	S
Template Known Secondary structure		T													T	T			G	G	G	G	T	B	S	S																						T	T					S	S									S	S	S	B							T	T	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																						.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	L	V	I	A	T	G	G	L	S	M	P	G	L	G	A	S	P	F	G	Y	K	I	A	E	Q	F	G	L	N	V	L	P	T	R	A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	F	T	L	H	K	P	L	L	E	E	L	Q	V	L	A	G	V	A
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.
Template Sequence		R	H	V	V	L	A	V	G	H	S	A	R	.	.	.	.	.	.	.	D	T	F	E	X	L	H	E	R	G	V	Y	X	E	A	K	P	F	S	V	G	F	R	I	E	H	K	Q	S	X	I	D	E	A	R	F	G	P	N	A	G	H	P	I	L	G	A	A	D	Y	K	L	V	H	H	C	K	N	G	R	T
Template Known Secondary structure		S								T	T			.	.	.	.	.	.	.									T	T																										T	S	T	T	T	T		T	T	T		S										T	T	S
Template Predicted Secondary structure														.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.								.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	S	V	I	T	A	E	N	G	T	V	F	R	E	N	L	L	F	T	H	R	G	L	S	G	P	A	V	L	Q	I	S	S	Y	W	Q	P	G	E	F	V	S	I	N	L	L	P	D	V	D	L	E	T	F	L	N	E	Q	R	N	A	H	P	N	Q	S	L	K	N	T	L	A	V	H	L	P	K	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	S	F	C	X	C	P	G	G	T	V	V	A	A	T	S	E	E	G	R	V	V	T	N	G	X	S	Q	Y	S	R	A	E	R	N	A	N	S	A	I	V	V	G	I	S	P	E	V	D	Y	P	G	D	P	L	A	G	I	R	F	Q	R	E	L	E	S	N	A	Y	K	L	G	G	E	N	Y	D	A	P
Template Known Secondary structure																			S	T	T										T	T			S	S												B	T	T	T	B			S	T	T																	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		292	.	.	.	.	.	.															.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.							.	350
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.																.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.																.	.	.	.	.	.
Query Sequence		V	E	R	L	Q	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	I	P	D	V	S	L	K	Q	L	N	V	R	D	Q	Q	A	L	I	S	T	L	T	D	W	R	V	Q	P	N	G	T	E	G	.	Y	R	T	A	E	V	T	L	G	G	V	D	T	N	E	.	.	.	.	.	.	L	S
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.																.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.																.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	K	I	G	D	F	L	K	G	R	D	P	S	Q	L	G	D	V	E	P	S	F	T	P	G	I	K	L	T	D	L	S	K	A	L	P	P	F	A	V	E	A	I	R	E	A	I	P	A	F	D	R	K	I	K	G	F	A	S	E	D	G	L	L	T	G	V	E	T	R	T	S	S	P	V	C	I	K	R
Template Known Secondary structure											T		T	T					S	S					S	S							G	G	G	T	S																	T	T	S	T	T	T	T		T	T										S	S		S
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	T	M	E	A	R	K	V	P	G	L	Y	F	I	G	E	V	M	D	V	T	G	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	W	A	C	A	Q	D	L	I	A	A
Query Conservation
Alig confidence																									.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		G	K	D	F	Q	S	V	N	L	K	G	F	Y	P	A	G	E	G	A	G	Y	A	G	.	.	.	.	.	G	I	L	S	A	G	I	D	G	I	K	V	A	E	A	V	A	R	D
Template Known Secondary structure		T	T	T	T	S		T	T		B	T									T	S			.	.	.	.	.	S
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.						.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.