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Job DescriptionP37631
Confidence99.56%DateThu Jan 5 11:56:04 GMT 2012
Rank99Aligned Residues343
% Identity14%Templatec3nksA_
PDB info PDB header:oxidoreductase/oxidoreductase inhibitorChain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20...... ...30.........40.........50.........60.........70........
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Query Sequence  DAIIIGAGAAGMFCSALAGQAG. . RRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFT. . . .
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Template Sequence  TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSE
Template Known Secondary structure 

BTSSS


SSSSSBTT


TTS
SS


B


TT
GGG
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VLPVRGDHPAAQNRFLYVGGALHALPTGLRGPSPPFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSL
Template Known Secondary structure 
TTS
TT


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SSTTTTS



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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   7980.........90.. .......100.........110.........120.....
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Query Sequence  . . . . . . . . . . . . . . . . . QWDFIDLVNKHGIA. . . . . . . . . . . . . . . . WHEKTLGQLFCDDSAQQIVDMLVDECEKGNVTF
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Template Conservation              
                                              

       
           
Template Sequence  CRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSV
Template Known Secondary structure  SS
TTTBB
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TT
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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
   126...130.........140.........150.........160.........170.........180.........190.........200.....
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Query Sequence  RLRSEVLSVAKDETGFTLDLNGMTVGCEKLVIATGGLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQ
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Template Sequence  LRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPA. . . . . . . . . . . . SVLSEL. . . LPAEAAPLARALSAITAVSVAV
Template Known Secondary structure 
S




GGG

SS
S
S
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GGGT

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   252.......260.........270.........280........ .290.... .....300.........310......
 
   206...210.........220.........230.........240.........250.........260.........270.........280.....
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Query Sequence  VLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLKNTLAV
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Template Sequence  VNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVML. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT


SS
SS

TTT
SS

GGGSTTTT
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   317..320.........330.........340.........350.........360.........
 
   286...290.........300.........310.........320.........330.........340.........350.........360.....
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Query Sequence  HLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVPGLYFI
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Template Conservation  .                           
              
  
  
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Template Sequence  . GGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLT. AHRLPLTLA
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S

BTT.TT
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   370.........380.........390.........400.........410.........420.........430........ .440.......
 
   366...370.........380.........390.......
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Query Sequence  GEVMDVTGWLGGYNFQWAWSSAWACAQDLIAA
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Template Sequence  GA. . . . . . SYEGVAVNDCIESGRQAAVSVLGT
Template Known Secondary structure  ST......TTS

S
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   448. 450.........460.........470...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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