Job Description P37631 Confidence 99.62% Date Thu Jan 5 11:56:04 GMT 2012 Rank 80 Aligned Residues 329 % Identity 15% Template c3g5rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate Resolution 1.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	R	F	D	A	I	I	I	G	A	G	A	A	G	M	F	C	S	A	L	A	G	Q	A	G	R	R	V	L	L	I	D	N	G	K	K	P	G	R	K	I	L	M	S	G	G	G	R	C	N	F	T	N	L	Y	V	E	P	G	A	Y	L	S	Q	N	P	H	F	C	K	S	A	L	A	R	F	T	Q	W
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		M	E	.	.	R	V	N	V	V	G	A	G	L	A	G	S	E	A	A	W	T	L	L	R	L	G	V	P	V	R	L	F	E	M	R	P	K	R	M	T	P	A	H	G	T	D	R	F	A	E	I	V	C	S	N	S	L	G	G	E	G	E	T	N	A	K	G	L	L	Q	A	E	M	R	R	A	G	S	L	V
Template Known Secondary structure				.	.	S							S													T	T									T	T	T	S			S	S			S	S		T	T				S								S	T	T													T	T
Template Predicted Secondary structure				.	.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	I	D	L	V	N	K	H	G	I	A	W	H	E	K	T	L	G	Q	L	F	C	D	D	S	A	Q	Q	I	V	D	M	L	V	D	E	C	E	K	G	N	V	T	F	R	L	R	S	E	V	L	S	V	A	K	D	E	T	G	F	T	L	D	L	N	G	M	T	V	G	C	E	K	L	V	I	A	T	G
Query Conservation
Alig confidence									.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	A	A	D	L	A	.	.	.	.	.	.	.	R	V	P	A	G	G	A	L	A	V	D	R	E	E	F	S	G	Y	I	T	E	R	L	T	G	H	P	L	L	E	V	V	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	R	E	I	P	P	G	I	T	V	L	A	T	G
Template Known Secondary structure								T	.	.	.	.	.	.	.					S	S																			T		T	T						S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S			S	S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	M	P	G	L	G	A	S	P	F	G	Y	K	I	A	E	Q	F	G	L	N	V	L	P	T	R	A	G	L	V	P	F	T	L	H	K	P	L	L	E	E	L	Q	V	L	A	G	V	A	V	P	S	V	I	T	A	E	N	G	T	V	F	R	E	N	L	L	F	T	H	R	G	L	S	G	P	A	V
Query Conservation
Alig confidence									.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	T	S	E	A	L	.	.	.	.	.	A	E	A	L	K	R	R	F	G	D	H	F	L	A	Y	Y	D	A	A	S	P	I	V	L	Y	E	S	I	D	L	T	K	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	A	G	R	Y	G	Q	S	A	D	Y	L	N	C	P
Template Known Secondary structure		T	T						.	.	.	.	.										G	G	G													G	G	G	S		G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S		T	T
Template Predicted Secondary structure									.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.							.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence		L	Q	I	S	S	Y	W	Q	P	G	E	F	V	S	I	N	L	L	P	D	V	D	L	E	T	F	L	N	E	Q	R	N	A	H	P	N	Q	S	L	K	N	T	L	A	V	H	L	P	K	R	L	V	E	R	L	Q	Q	L	G	Q	I	.	.	.	.	.	.	P	D	V	S	L	K	Q	L	N	V	R	D	Q
Query Conservation																																																															.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.
Template Conservation
Template Sequence		M	T	E	E	E	Y	R	R	F	H	Q	A	L	L	E	A	C	V	P	V	E	E	L	A	R	R	G	Y	Q	T	L	L	F	G	P	M	K	P	V	G	L	V	D	P	R	T	G	K	E	P	F	A	V	V	Q	L	R	Q	E	D	K	A	G	R	M	W	S	L	V	G	F	Q	T	G	L	K	W	P	E	Q
Template Known Secondary structure																													T	T					T	T	T			T	T			B	T	T	T	T	B			S									S	T	T	S						T	T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350						.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.								.	.	.	.	.
Query SS confidence																															.	.								.	.	.	.	.
Query Sequence		Q	A	L	I	S	T	L	T	D	W	R	V	Q	P	N	G	T	E	G	Y	R	T	A	E	V	T	L	G	G	.	.	V	D	T	N	E	L	S	.	.	.	.	.	S	R	T	M	E	A	R	K	V	P	G	L	Y	F	I	G	E	V	M	D	V	T	G	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A
Query Conservation																															.	.								.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.													.	.								.	.	.	.	.																										.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.
Template Sequence		K	R	L	I	Q	M	I	.	.	.	.	.	.	.	.	.	.	P	G	L	E	N	A	E	I	V	R	Y	G	V	M	H	R	N	T	Y	L	N	A	P	R	L	L	G	E	T	L	E	F	R	E	A	E	G	L	Y	A	A	G	V	L	A	G	V	E	G	Y	L	.	.	.	.	.	.	E	S	A	A	T	G
Template Known Secondary structure						T	T	S	.	.	.	.	.	.	.	.	.	.	T	T		T	T																					B		T	T	S	B	B	T	T	S	T	T					G	G	G	G	T	B		S			.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.											.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.							.	.	.	.	.	350
		388	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	A	C	A	Q	D	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	A	G	L	N	A	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		351	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions