Job Description P37631 Confidence 99.93% Date Thu Jan 5 11:56:04 GMT 2012 Rank 19 Aligned Residues 352 % Identity 16% Template c3cp8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum Resolution 3.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	F	D	A	I	I	I	G	A	G	A	A	G	M	F	C	S	A	L	A	G	Q	A	G	R	R	V	L	L	I	D	N	G	K	K	P	G	R	K	I	L	M	S	G	G	G	R	C	N	F	T	N	L	Y	V	E	P	G	A	Y	L	S	Q	N	P	H	F	C	K	S	A	L	A	R	F	T	Q	W	D
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Sequence		H	M	Y	D	V	I	V	V	G	A	G	H	A	G	C	E	A	A	L	A	V	A	R	G	G	L	H	C	L	L	I	T	S	D	L	S	A	V	A	R	M	S	.	.	.	.	.	.	.	.	.	.	.	.	.	C	N	P	A	I	G	G	V	A	K	G	Q	I	T	R	E	I	D	A	L	G	G	.	.	E
Template Known Secondary structure												S													T	T								S		G	G	G	T	T			S	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S					T	T												T		.	.	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.														.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																																													.	.
Query SS confidence																			.	.	.	.	.	.																																													.	.
Query Sequence		F	I	D	L	V	N	K	H	G	I	A	W	H	E	K	T	L	.	.	.	.	.	.	G	Q	L	F	C	D	D	S	A	Q	Q	I	V	D	M	L	V	D	E	C	E	K	G	N	V	T	F	R	L	R	S	E	V	L	S	V	A	K	D	E	T	G	F	T	.	.	L	D	L	N	G	M	T	V	G	C	E
Query Conservation																			.	.	.	.	.	.																																													.	.
Alig confidence																			.	.	.	.	.	.																																													.	.
Template Conservation
Template Sequence		M	G	K	A	I	D	A	T	G	I	Q	F	R	M	L	N	R	S	K	G	P	A	M	H	S	P	R	A	Q	A	D	K	T	Q	Y	S	L	Y	M	R	R	I	V	E	H	E	P	N	I	D	L	L	Q	D	T	V	I	G	V	S	A	N	S	G	K	F	S	S	V	T	V	R	S	G	R	A	I	Q	A	K
Template Known Secondary structure																		S	S	S		T	T	T																						T		T	T															T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		K	L	V	I	A	T	G	G	L	S	M	P	G	L	G	A	S	P	F	G	Y	K	I	A	E	Q	F	G	L	N	V	L	P	T	R	A	G	L	V	P	F	T	L	H	K	.	.	.	.	.	P	L	L	E	E	L	Q	V	L	A	G	V	A	V	P	S	V	I	T	A	E	N	G	T	V	F	R	E	N	L
Query Conservation																																															.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	I	L	A	C	G	T	F	L	N	G	L	I	H	.	.	.	.	.	.	.	.	.	.	.	I	G	M	D	H	F	P	G	G	R	S	T	A	E	P	P	V	E	G	L	T	E	S	L	A	S	L	G	F	S	F	G	R	L	K	T	G	T	P	P	R	I	D	S	R	S	V	D	Y	T	I	V	T	E
Template Known Secondary structure								T	T		B	T					.	.	.	.	.	.	.	.	.	.	.		T	T						S	S	S	T	T	S			B		S								T	T																G	G	G	S		T	T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.												160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																													.	.	.																																		.
Query SS confidence																																													.	.	.																																		.
Query Sequence		L	F	T	H	R	G	L	S	G	P	A	V	L	Q	I	S	S	Y	W	Q	P	G	E	F	V	S	I	N	L	L	P	D	V	D	L	E	T	F	L	N	E	Q	R	.	.	.	N	A	H	P	N	Q	S	L	K	N	T	L	A	V	H	L	P	K	R	L	V	E	R	L	Q	Q	L	G	Q	I	P	D	V	.
Query Conservation																																													.	.	.																																		.
Alig confidence																																													.	.	.																																		.
Template Conservation
Template Sequence		Q	P	G	D	V	D	P	V	P	F	S	F	S	S	T	S	V	A	N	R	N	L	V	S	C	Y	L	T	K	T	T	E	K	T	H	D	I	L	R	T	G	F	D	R	S	P	L	F	T	G	C	P	S	I	E	D	K	I	S	R	F	P	D	K	S	S	H	H	I	F	L	E	P	E	G	T	D	T	V	E
Template Known Secondary structure						S	S				S	S	S	S					G	G	G																				T	T	T	T	T		T	T							S									S		S									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
							305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure		.	.	.	.	.																																								.	.										.	.	.	.
Query SS confidence		.	.	.	.	.																																								.	.										.	.	.	.
Query Sequence		.	.	.	.	.	S	L	K	Q	L	N	V	R	D	Q	Q	A	L	I	S	T	L	T	D	W	R	V	Q	P	N	G	T	E	G	Y	R	T	A	E	V	T	L	G	G	.	.	V	D	T	N	E	L	S	S	R	.	.	.	.	T	M	E	A	R	K	V	P	G	L	Y	F	I	G	E	V	M	D	V	T	G
Query Conservation		.	.	.	.	.																																								.	.										.	.	.	.
Alig confidence		.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.													.	.										.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.
Template Sequence		M	Y	V	N	G	F	S	T	S	L	P	E	D	I	Q	I	A	G	L	R	S	I	.	.	.	.	.	.	.	.	.	.	P	G	L	E	E	A	K	M	I	R	P	G	Y	A	I	E	Y	D	F	F	H	P	W	Q	I	R	S	T	M	E	T	R	P	V	E	N	L	F	F	A	G	Q	I	N	G	T	S	G
Template Known Secondary structure						T					S										T	T	S	.	.	.	.	.	.	.	.	.	.	T	T		T	T																	G	G	G	B		T	T	S	B	B	S	S	S	B	T					S	G	G	G	T	B
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.											.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	W	A	C	A	Q	D	L	I
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	Y	E	E	A	A	A	Q	G	L	M	A	G	I	N	A	V
Template Known Secondary structure		.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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