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Job DescriptionP37631
Confidence99.93%DateThu Jan 5 11:56:04 GMT 2012
Rank20Aligned Residues340
% Identity16%Templatec3cesB_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of e.coli mnmg (gida), a highly-conserved trna2 modifying enzyme
Resolution2.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  ERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWD
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Template Sequence  DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMS. . . . . . . . . . . . . CNPAIGGIGKGHLVKEVDALGG. . L
Template Known Secondary structure  S

S

STT

S
GGGTT

S.............S
S
TTTT
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   5....10.........20.........30.........40...... ...50.........60........ .
 
   82.......90.........100..... ....110.........120.........130.........140...... ...150...
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Query Sequence  FIDLVNKHGIAWHEKTLGQLFCDD. . . . . . SAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLDLN. . GMTVGCE
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Template Sequence  MAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAK
Template Known Secondary structure  STTS
TTS

T
TT

SSSBTTS
S
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   70.........80.........90.........100.........110.........120.........130.........140.........
 
   154.....160. ........170.........180.........190.........200.........210.........220.........230.
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Query Sequence  KLVIATGG. . LSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFT
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Template Sequence  AVVLTVGTFLDGKIHIGSIPLSRRLRE. LPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVFSFMGNASQHPQQVP
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SGGG





.TT



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GGGS


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   150.........160.........170...... ...180.........190.........200.........210.........220........
 
   232.......240.........250.........260.........270.........280.........290.........300.........310.
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Query Sequence  HRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNV
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Template Sequence  CYITHTNEKTHDVIRSNLSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSM. . . . . . . . . . . .
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TTTS
TT


S
TT

T


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   242.......250.........260.........270.........280.........290.........300.........
 
   312.......320.........330.........340........ .350.. .......360.........370.........380.....
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Query Sequence  RDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNE. . LSSR. . . . TMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . QGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTG. . . . . . YEEAAA
Template Known Secondary structure  ....................TT
TT




GGGB
TTSBBSSSBT
GGGGT


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   329330.........340.........350.........360.........370...... ...380..
 
   386...390.....
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Query Sequence  SAWACAQDLI
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Template Sequence  QGLLAGLNAA
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   383......390..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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