Job Description P37631 Confidence 99.35% Date Thu Jan 5 11:56:04 GMT 2012 Rank 141 Aligned Residues 314 % Identity 14% Template c2vdcI_ PDB info PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	I	I	G	A	G	A	A	G	M	F	C	S	A	L	A	G	Q	A	G	R	R	V	L	L	I	D	N	G	K	K	P	G	R	K	I	L	M	S	G	G	G	R	C	N	F	T	N	L	Y	V	E	P	G	A	Y	L	S	Q	N	P	H	F	C	K	S	A	L	A	R	F	T	Q	W	D	F	I	D	L
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	V	I	G	A	G	P	A	G	L	A	A	A	E	E	L	R	A	K	G	Y	E	V	H	V	Y	D	R	Y	D	R	M	G	G	L	L	V	Y	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S														T								S	S	S	S		S	T					T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		V	N	K	H	G	I	A	W	H	E	K	T	L	G	Q	L	F	C	D	D	S	A	Q	Q	I	V	D	M	L	V	D	E	C	E	K	G	N	V	T	F	R	L	R	S	E	V	.	.	.	L	S	V	A	K	D	E	T	G	F	T	L	D	L	N	G	M	T	V	G	C	E	K	L	V	I	A	T	G	G	L
Query Conservation																																																.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	F	K	L	E	K	S	V	V	E	R	R	V	K	L	L	A	D	A	G	V	I	Y	H	P	N	F	E	V	G	R	D	A	S	L	P	E	L	R	R	K	H	V	A	V	L	V	A	T	G	V	Y	K	A	R	D	I	K	A	P	G	S	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	S															T	T					T	T			B	T	T	T	B							S	S		S														T	T		S			T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	P	G	L	G	A	S	P	F	G	Y	K	I	A	E	Q	F	G	L	N	V	L	P	T	R	A	G	L	V	P	F	T	L	H	K	P	L	L	E	E	L	Q	V	L	A	G	V	A	V	P	S	V	I	T	A	E	N	G	T	V	F	R	E	N	L	L	F	T	H	R	G	L	S	G	P	A	V	L	Q
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		L	G	N	I	V	A	A	L	D	Y	L	T	T	S	N	K	V	S	L	G	D	T	V	E	A	Y	E	N	G	S	L	N	A	A	G	K	H	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	A	I	R	Q	G	A	T	S	V	K	C	L	Y	R	R	D	R	K	N	M	P	G	S	Q	R	E	.
Template Known Secondary structure		T	T	T																	T	T	T		S	S			T	T		S					S							S	S													T	T		S							S	S		S	T	T		S	S					.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	S	Y	W	Q	P	G	E	F	V	S	I	N	L	L	P	D	V	D	L	E	T	F	L	N	E	Q	R	N	A	H	P	N	Q	S	L	K	N	T	L	A	V	H	L	P	K	R	L	V	E	R	L	Q	Q	L	G	Q	I	P	D	V	S	L	K	Q	L	N	V	R	D	Q	Q	A	L	I	S	T	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	H	A	E	E	E	G	V	E	F	I	W	Q	A	A	P	E	G	F	T	G	D	T	V	V	T	G	V	R	A	V	R	I	H	L	G	V	A	D	A	T	G	R	Q	T	P	Q	V	I	E	G	S	E	F	T	V	Q	A	D	L	V	I	K	A	L	G	F	E	P	E	D	L	P	N	A	F	D	E	P
Template Known Secondary structure								T	T							S	S	S											T	T														T	T																S						S													S	T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	W	R	V	Q	P	N	G	T	E	G	Y	R	T	A	E	V	T	L	G	G	V	D	T	N	E	L	S	S	R	T	M	E	A	R	K	V	P	G	L	Y	F	I	G	E	V	M	D	V	T	G	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	W	A	C	A	Q	D	L	I	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																		.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																		.	.	.	.	.
Template Sequence		E	L	K	V	T	R	W	G	.	.	.	.	.	.	.	.	.	.	.	.	T	L	L	V	D	H	.	.	.	.	R	T	K	M	T	N	M	D	G	V	F	A	A	G	D	I	V	.	.	.	.	.	R	G	A	S	L	V	V	W	A	I	R	D	G	R	D	A	A	E	G	I	H	A
Template Known Secondary structure		T	S		B		T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	S	B				T	.	.	.	.	T	T		B		S	S	T	T					G	G	G	G	.	.	.	.	.	S	S			S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.																		.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.													.	.	.	.	.	.					.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.						.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions