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Job DescriptionP37631
Confidence99.60%DateThu Jan 5 11:56:04 GMT 2012
Rank86Aligned Residues347
% Identity15%Templatec2cfyB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of human thioredoxin reductase 1
Resolution2.7 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  RFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDF
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Template Sequence  DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCV. . . . . . . . . . . . NVGCIPKKLMHQAALLGQA
Template Known Secondary structure  S

STTT







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TT............S
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   12.......20.........30.........40.........50.........60 .........70.........
 
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Query Sequence  IDLVNKHGIAWHEKTLGQL. . . . . FCDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLDLNGMTVGCEKLVI
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Template Sequence  LQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLI
Template Known Secondary structure  TT



SS



TT

TTTTS
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   80.........90.........100.........110.........120.........130.........140.........150.........
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  ATGGLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSG
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Template Sequence  ATGERPRYLGIPGDKEY. . . . . . . . . CISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQ
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SSTT.........
B
TT
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S

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   160.........170...... ...180.........190.........200.........210.........220.........230
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  PAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQAL
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Template Sequence  DMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEI. . . . . . . . . . IEGEYNTVMLAIGRDACTRKI
Template Known Secondary structure  TT
S
STT
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S
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   318.320.........330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  ISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQDLIAA
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Template Sequence  GLETVGVKINEKT. . . . . . . . . . . GKIPVTD. . . . . EEQTNVPYIYAIGDILEDKVEL. . . . TPVAIQAGRLLAQRLYAG
Template Known Secondary structure 
GGGTT



TTT...........

B


T.....TSB
SSTT
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   301........310... ......320 .........330.........340.. .......350.........360
 
   398.400
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Query Sequence  KSS
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Template Sequence  STV
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   361..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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