Job Description P37631 Confidence 99.39% Date Thu Jan 5 11:56:04 GMT 2012 Rank 132 Aligned Residues 323 % Identity 13% Template c2bcpA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: structural analysis of streptococcus pyogenes nadh oxidase:2 c44s nox with azide Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		M	E	R	F	D	A	I	I	I	G	A	G	A	A	G	M	F	C	S	A	L	A	G	Q	A	.	.	.	G	R	R	V	L	L	I	D	N	G	K	K	P	G	R	K	I	L	M	S	G	G	G	R	C	N	F	T	N	L	Y	V	E	P	G	A	Y	L	S	Q	N	P	H	F	C	K	S	A	L	A	R	F
Query Conservation																											.	.	.
Alig confidence				.																							.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	G	.	S	K	I	V	V	V	G	A	N	H	A	G	T	A	C	I	K	T	M	L	T	N	Y	G	D	A	N	E	I	V	V	F	D	Q	N	S	N	I	S	F	L	G	S	G	M	A	L	W	I	G	E	Q	I	A	G	P	E	G	L	F	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.									S															G	G	G	S							S	S	S				B		T	T							T	T	S	S	S	S	S	T	T	S	B			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		0	.		.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	W	D	F	I	D	L	V	N	K	H	G	I	A	W	H	E	K	T	L	G	Q	L	F	C	D	D	S	A	Q	Q	I	V	D	M	L	V	D	E	C	E	K	G	N	V	T	F	R	L	R	S	E	V	L	S	V	A	K	D	E	T	G	F	T	L	D	L	N	G	M	T	V	G	C	E	K	L	V	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	E	E	L	E	S	L	G	A	K	V	Y	M	E	S	P	V	Q	S	I	D	Y	D	A	K	T	V	T	A	L	V	D	G	K	N	H	V	E	T	Y	D	K	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	T					T	T								T	T	T	T						S	S	S	S							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																						64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	G	G	L	S	M	P	G	L	G	A	S	P	F	G	Y	K	I	A	E	Q	F	G	L	N	V	L	P	T	R	A	G	L	V	P	F	T	L	H	K	P	L	L	E	E	L	Q	V	L	A	G	V	A	V	P	S	V	I	T	A	E	N	G	T	V	F	R	E	N	L	L	F	T	H	R	G	L	S	G
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template Sequence		I	F	A	T	G	S	Q	P	I	L	P	P	I	K	G	.	.	.	.	.	.	.	.	.	.	.	A	E	I	K	E	G	S	L	E	F	E	A	T	L	E	N	L	Q	F	V	K	L	Y	Q	N	S	A	D	V	I	A	K	L	E	N	K	D	I	K	R	V	A	V	.	.	.	.	.	.	V	G	A	G	Y
Template Known Secondary structure													S		B	T	.	.	.	.	.	.	.	.	.	.	.			B		T	T		S	S			B	S	S	T	T					S	S											T	T		T	T							.	.	.	.	.	.				S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.												.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.							.	.	.	.	170
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	V	L	Q	I	S	S	Y	W	Q	P	G	E	F	V	S	I	N	L	L	P	D	V	D	L	E	T	F	L	N	E	Q	R	N	A	H	P	N	Q	S	L	K	N	T	L	A	V	H	L	P	K	R	L	V	E	R	L	Q	Q	L	G	Q	I	P	D	V	S	L	K	Q	L	N	V	R	D	Q	Q	A	L
Query Conservation
Alig confidence																																																							.	.	.
Template Conservation																																																							.	.	.
Template Sequence		I	G	V	E	L	A	E	A	F	Q	R	K	G	K	E	V	V	L	I	D	V	V	D	T	C	L	A	G	Y	Y	D	R	D	L	T	D	L	M	A	K	N	M	E	E	H	G	I	Q	L	A	F	G	E	.	.	.	T	V	K	E	V	A	G	N	G	K	V	E	K	I	I	T	D	K	N	E	Y	D	V	D
Template Known Secondary structure													T	T								S	S	S	S	S	S	T	T	T	S														T	T	T						S		.	.	.								S	S	S							S	S						S
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.						.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		I	S	T	L	T	D	W	R	V	Q	P	N	G	T	E	G	Y	R	T	A	E	V	T	L	G	G	V	D	T	N	E	L	S	S	R	T	M	E	A	R	K	V	P	G	L	Y	F	I	G	E	V	M	D	V	T	G	W	L	G	G	.	.	.	.	.	Y	N	F	Q	W	A	W	S	S	A	W	A	C	A	Q
Query Conservation																																																														.	.	.	.	.
Alig confidence																																	.	.	.	.	.																									.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		M	V	I	L	A	V	G	F	R	P	N	T	T	L	G	N	G	K	I	D	L	F	R	N	G	A	F	L	V	N	K	.	.	.	.	.	R	Q	E	T	S	I	P	G	V	Y	A	I	G	D	C	A	T	I	Y	D	N	A	T	R	D	T	N	Y	I	A	L	A	S	N	A	V	R	T	G	I	V	A	A	H
Template Known Secondary structure														G	G	G	T	T	S	S		B		T	T	S		B				T	.	.	.	.	.	T		B		S	S	T	T					G	G	G	B					T	T	T	T
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		393	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	I	A	A	K	S	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	C	G	T	D	L	E
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions