Job Description P37631 Confidence 100.00% Date Thu Jan 5 11:56:04 GMT 2012 Rank 11 Aligned Residues 363 % Identity 21% Template c2aczA_ PDB info PDB header:oxidoreductase/electron transport Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: complex ii (succinate dehydrogenase) from e. coli with atpenin a52 inhibitor co-crystallized at the ubiquinone binding site Resolution 3.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.										.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.
Query Sequence		M	E	R	F	D	A	I	I	I	G	A	G	A	A	G	M	F	C	S	A	L	A	G	Q	A	G	R	R	V	L	L	I	D	N	G	K	K	P	G	R	K	I	L	M	S	G	G	G	R	C	N	F	T	N	L	Y	V	E	.	.	.	.	.	.	.	.	.	P	G	A	Y	L	S	Q	N	P	H	F	C	K
Query Conservation																																																												.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	E	F	D	A	V	V	I	G	A	G	G	A	G	M	R	A	A	L	Q	I	S	Q	S	G	Q	T	C	A	L	L	S	K	V	F	P	T	R	S	H	T	V	S	A	Q	G	G	I	T	V	A	L	G	N	T	H	E	D	N	W	E	W	H	M	Y	D	T	V	K	G	S	D	Y	I	G	D	Q	D	A
Template Known Secondary structure		B			B	S							S													T	T								S	S		G	G	G	S	G	G	G	G			S								S	S	S																T	S		S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	L	A	R	F	T	Q	W	D	F	I	D	L	V	N	K	H	G	I	A	W	H	E	K	T	L	G	Q	L	F	C	D	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	Q	I	V	D	M	L	V	D	E	C	E	K	G	N	V	T	F	R	L	R	S
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	Y	M	C	K	T	G	P	E	A	I	L	E	L	E	H	M	G	L	P	F	S	R	L	D	D	G	R	I	Y	Q	R	P	F	G	G	Q	S	K	N	F	G	G	E	Q	A	A	R	T	A	A	A	A	D	R	T	G	H	A	L	L	H	T	L	Y	Q	Q	N	L	K	N	H	T	T	I	F	S	E	W
Template Known Secondary structure																		T	T	T					B		S			S	S					S	S	B						T	T	S	S	S						S	T	T																	T	T						S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.															.	.	.	.	.	.
Query Sequence		E	V	L	S	V	A	K	D	E	T	G	F	T	L	D	L	N	G	M	.	.	.	.	.	.	.	.	T	V	G	C	E	K	L	V	I	A	T	G	G	L	.	.	.	.	.	.	S	M	P	G	L	G	A	S	P	F	G	Y	K	I	A	E	Q	F	G	L	N	V	L	P	T	R	A	G	L	V	P	F	T
Query Conservation																					.	.	.	.	.	.	.	.															.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		Y	A	L	D	L	V	K	N	Q	D	G	A	V	V	G	C	T	A	L	C	I	E	T	G	E	V	V	Y	F	K	A	R	A	T	V	L	A	T	G	G	A	G	R	I	Y	Q	S	T	T	N	A	H	I	N	T	G	D	G	V	G	M	A	I	R	A	G	V	P	V	Q	D	M	E	M	W	Q	F	H	P	T
Template Known Secondary structure										T	T	S										T	T	T								B	S										T	T	S	S	S	S	B	S	S		T	T				T	T					T	T	T	T			B	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	K	P	L	L	E	E	L	Q	V	L	A	G	V	A	V	P	S	V	I	T	A	E	N	G	T	V	F	R	E	N	L	L	F	T	H	R	G	L	S	G	P	A	V	L	Q	I	S	S	Y	W	Q	P	G	E	F	V	S	I	N	L	L	P	D	V	D	L	E	T	F	L	N	E	Q	R	N	A	H	P
Query Conservation
Alig confidence											.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	A	G	A	G	V	L	V	.	T	E	G	C	R	G	E	G	G	Y	L	L	N	K	H	G	E	R	F	M	E	R	Y	A	P	N	A	K	D	L	A	G	R	D	V	V	A	R	S	I	M	I	E	I	R	E	G	R	G	C	D	G	P	W	G	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T			B		.		T						T						T	T	S								S	T	T	T	G	G	G	S												T	T	T	T	T		S			S	T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.						.	350
Predicted Secondary structure																																																																											.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.
Query Sequence		N	Q	S	L	K	N	T	L	A	V	H	L	P	K	R	L	V	E	R	L	Q	Q	L	G	Q	I	P	D	V	S	L	K	Q	L	N	V	R	D	Q	Q	A	L	I	S	T	L	T	D	W	R	V	Q	P	N	G	T	E	G	Y	R	T	A	E	V	T	L	G	G	V	D	T	N	E	.	.	.	.	.	L	S
Query Conservation																																																																											.	.	.	.	.
Alig confidence		.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation		.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	A	K	L	K	L	D	H	L	G	K	E	V	L	E	S	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	I	L	E	L	S	R	T	F	A	H	V	D	P	V	K	E	P	I	P	V	I	P	T	C	H	Y	M	M	G	G	I	P	T	K	V	T	G	Q	A	L	T	V
Template Known Secondary structure		.	.	.						T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S				T	T	T	S																	B		T	T
Template Predicted Secondary structure		.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.																	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																						.	.				.	.
Query SS confidence																						.	.				.	.
Query Sequence		S	R	T	M	E	A	R	K	V	P	G	L	Y	F	I	G	E	V	M	D	.	.	V	T	G	.	.	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	W	A	C	A	Q	D	L	I	A
Query Conservation																						.	.				.	.
Alig confidence																						.	.				.	.
Template Conservation
Template Sequence		N	E	K	G	E	D	V	V	V	P	G	L	F	A	V	G	E	I	A	C	V	S	V	H	G	A	N	R	L	G	G	N	S	L	L	D	L	V	V	F	G	R	A	A	G	L	H	L	Q	E
Template Known Secondary structure			T	T	S												S	S	S				S	S	S	T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.