Job Description P37631 Confidence 100.00% Date Thu Jan 5 11:56:04 GMT 2012 Rank 6 Aligned Residues 365 % Identity 18% Template c1yq4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone Resolution 2.33 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.										.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.
Query Sequence		E	R	F	D	A	I	I	I	G	A	G	A	A	G	M	F	C	S	A	L	A	G	Q	A	G	R	R	V	L	L	I	D	N	G	K	K	P	G	R	K	I	L	M	S	G	G	G	R	C	N	F	T	N	L	Y	V	E	.	.	.	.	.	.	.	.	.	P	G	A	Y	L	S	Q	N	P	H	F	C	K	S
Query Conservation																																																											.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	E	F	D	A	V	V	V	G	A	G	G	A	G	L	R	A	A	F	G	L	S	E	A	G	F	N	T	A	C	V	T	K	L	F	P	T	R	S	H	T	V	A	A	Q	G	G	I	N	A	A	L	G	N	M	E	D	D	N	W	R	W	H	F	Y	D	T	V	K	G	S	D	W	L	G	D	Q	D	A	I
Template Known Secondary structure					S							S													T	T								S	S		G	G	G	S	G	G	G	G			S								S	S	S															T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																								.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	A	R	F	T	Q	W	D	F	I	D	L	V	N	K	H	G	I	A	W	H	E	K	T	L	G	Q	L	F	C	D	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	Q	I	V	D	M	L	V	D	E	C	E	K	G	N	V	T	F	R	L	R	S
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	Y	M	T	E	Q	A	P	A	A	V	I	E	L	E	N	Y	G	M	P	F	S	R	T	E	E	G	K	I	Y	Q	R	A	F	G	G	Q	S	L	Q	F	G	K	G	G	Q	A	H	R	C	C	C	V	A	D	R	T	G	H	S	L	L	H	T	L	Y	G	R	S	L	R	Y	D	T	S	Y	F	V	E	Y
Template Known Secondary structure																		T	T					B		T	T	S	S	B						T	T		B	S	G	G	G	T	S		B							S	T	T															T	T	S							T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.														.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.														.	.	.	.	.	.
Query Sequence		E	V	L	S	V	A	K	D	E	T	G	F	T	L	D	L	N	G	M	T	.	.	.	.	.	.	.	V	G	C	E	K	L	V	I	A	T	G	G	L	.	.	.	.	.	.	S	M	P	G	L	G	A	S	P	F	G	Y	K	I	A	E	Q	F	G	L	N	V	L	P	T	R	A	G	L	V	P	F	T	L
Query Conservation																						.	.	.	.	.	.	.														.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	L	D	L	L	M	E	N	G	E	C	R	G	V	I	A	L	C	I	E	D	G	T	I	H	R	F	R	A	K	N	T	V	I	A	T	G	G	Y	G	R	T	Y	F	S	C	T	S	A	H	T	S	T	G	D	G	T	A	M	V	T	R	A	G	L	P	C	Q	D	L	E	F	V	Q	F	H	P	T	G
Template Known Secondary structure										T	T										T	T	T	T								S										G	G	G	S	S	S	B	S	S		T	T													T						T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	P	L	L	E	E	L	Q	V	L	A	G	V	A	V	P	S	V	I	T	A	E	N	G	T	V	F	R	E	N	L	L	F	T	H	R	G	L	S	G	P	A	V	L	Q	I	S	S	Y	W	Q	P	G	E	F	V	S	I	N	L	L	P	D	V	D	L	E	T	F	L	N	E	Q	R	N	A	H	P	N
Query Conservation
Alig confidence						.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	G	A	.	G	C	L	I	T	E	G	C	R	G	E	G	G	I	L	I	N	S	Q	G	E	R	F	M	E	R	Y	A	P	V	A	K	D	L	A	S	R	D	V	V	S	R	S	M	T	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	E	G	R	G	C	G	P	E	K
Template Known Secondary structure			T	T	T	.			B			T					T	T						T	T	S			T					S	T	T	T	G	G	G	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	T		B	T	T	T	T
Template Predicted Secondary structure						.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.																		.	.	310	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.					.	350	.	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		Q	S	L	K	N	T	L	A	V	H	L	P	K	R	L	V	E	R	L	Q	Q	L	G	Q	I	P	D	V	S	L	K	Q	L	N	V	R	D	Q	Q	A	L	I	S	T	L	T	D	W	R	V	Q	P	N	G	T	E	G	Y	R	T	A	E	V	T	L	G	G	V	D	T	N	E	.	.	.	.	L	S	S	R
Query Conservation																																																																										.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	H	V	Y	L	Q	L	H	H	L	P	P	Q	Q	L	A	T	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	I	S	E	T	A	M	I	F	A	G	V	D	V	T	K	E	P	I	P	V	L	P	T	V	H	Y	N	M	G	G	I	P	T	N	Y	K	G	Q	V	I	T	H	V
Template Known Secondary structure			B						T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T	T	S												S		B			B		T	T	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.			370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																			.	.					.	.
Query SS confidence																			.	.					.	.
Query Sequence		T	M	E	A	R	K	V	P	G	L	Y	F	I	G	E	V	M	.	.	D	V	T	G	.	.	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	W	A	C	A	Q	D	L	I	A	A	K	S	S
Query Conservation																			.	.					.	.
Alig confidence																			.	.					.	.
Template Conservation
Template Sequence		N	G	E	D	K	V	V	P	G	L	Y	A	C	G	E	A	A	S	A	S	V	H	G	A	N	R	L	G	A	N	S	L	L	D	L	V	V	F	G	R	A	C	A	L	T	I	A	E	T	C	K	P
Template Known Secondary structure		T	T												G	G	G				S	S	S	T	T	S			T	T	S																						T
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.