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Job DescriptionP37631
Confidence99.74%DateThu Jan 5 11:56:04 GMT 2012
Rank34Aligned Residues219
% Identity27%Templatec1v59B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MER. FDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFT.
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Template Sequence  INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVG. . . . . . . . . . CIPSKALLNNSHLFHQMHTEAQK
Template Known Secondary structure 

STT

SSSSSSS..........SSGG
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
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Template Sequence  RGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIV
Template Known Secondary structure  GT


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TT
SSSSS

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   72.......80.........90.........100.........110.........120.........130.........140.........150.
 
   7980.........90.........100.........110.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QWDFIDLVNKHGIAWHEKTLGQLFCDDSAQQIVDMLV
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Template Conservation    
                                                                             
Template Sequence  ATGSEVTPFPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQ
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TT


BTTT
TT
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   152.......160.........170.........180.........190.........200.........210.........220.........230.
 
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Query Sequence  DECEKGNVTFRLRSEVLSVAKDETGFTLD. . . . . . . . LNGMTVGCEKLVIATGGLSMPGLGASPFGYKIAEQFGLNVLPT
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Template Sequence  KFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY. . . . . . . . . . . . . . . . . . . IAGL
Template Known Secondary structure  TT
TTTTTTTTTTS
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   232.......240.........250.........260.........270.........280........ .290..
 
   188.190.........200.........210.........220.........230.........240.........250.........260.......
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Query Sequence  RAGLVPFTLHKPLLEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFL
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Template Sequence  GAEKIGLEVDKR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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T

B
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   293......300....
 
   268.270.........280.........290.........300.........310.........320.........330.........340.......
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Query Sequence  NEQRNAHPNQSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTN
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Template Conservation  ..........................................................................
 
 

Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GRLVID
Template Known Secondary structure  ..........................................................................S
B


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   305....310
 
   348.350.........360.........370.........380.........390.........400
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Query Sequence  ELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQDLIAAKSS
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Template Sequence  D. . . . . QFNSKFPHIKVVGDVTFGPML. . . . . AHKAEEEGIAAVEMLKTGHGH
Template Known Secondary structure  T.....TSB
SSTT
GGGSSS


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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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