Return to main results Retrieve Phyre Job Id

Job DescriptionP37631
Confidence99.73%DateThu Jan 5 11:56:04 GMT 2012
Rank38Aligned Residues224
% Identity30%Templatec1lpfB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70........
Predicted Secondary structure 





































...
Query SS confidence 












































































. . .
Query Sequence  ERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILMSGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFT. . .
Query Conservation 
  







 


 

  
   
  
 



    

                                      ...
Alig confidence 












































....



























...
Template Conservation    








 


 

  
   
  
 



    

    
 ....     
  
                      
Template Sequence  QKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGG. . . . TCLNVGCIPSKALLDSSYKYHEAKEAFKVHG
Template Known Secondary structure 


ST



B
SSSSB
TT....STSGGGT
Template Predicted Secondary structure 




















....












Template SS confidence 















































































   2.......10.........20.........30.........40...... ...50.........60.........70.......
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                       
                          
Template Sequence  IEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEI
Template Known Secondary structure 


SS



TGGGTTS





B
Template Predicted Secondary structure 








































Template SS confidence 















































































   78.80.........90.........100.........110.........120.........130.........140.........150.......
 
   7980.........90.........100.........110.........120....
Predicted Secondary structure  ..................................






















Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .













































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QWDFIDLVNKHGIAWHEKTLGQLFCDDSAQQIVDMLVDECEKGNVT
Query Conservation  ..................................           
                                  
Alig confidence  ..................................













































Template Conservation                               
                                               

 
Template Sequence  PPAPLSDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLN
Template Known Secondary structure  TTB


TTT
TT
SS

S

STT

SSSSSSTTS
TT
Template Predicted Secondary structure 











































Template SS confidence 















































































   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   125....130.........140........ .150.........160.........170.........180.........190.........200
Predicted Secondary structure 



....



































Query SS confidence 























. . . .



















































Query Sequence  FRLRSEVLSVAKDETGFTLDLNGM. . . . TVGCEKLVIATGGLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPL
Query Conservation 
     
  
              ....           
                
   
                   
Alig confidence 























....











.......................
















Template Conservation 
     
  
        
             
 

 
 
.......................  
              
Template Sequence  IRLGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVG. . . . . . . . . . . . . . . . . . . . . . . RRPVTTDLLAADSGVTL
Template Known Secondary structure  TT


TT
SS
SS
S
.......................

TTTB
TTS


B
Template Predicted Secondary structure 











.......................











Template SS confidence 















































































   238.240.........250.........260.........270....... ..280.........290....
 
   201........210.........220.........230.........240.........250.........260.........270.........280
Predicted Secondary structure 












































Query SS confidence 















































































Query Sequence  LEELQVLAGVAVPSVITAENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPNQSLK
Query Conservation                      
                                                           
Alig confidence 


.............................................................................
Template Conservation     .............................................................................
Template Sequence  DER. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
TT.............................................................................
Template Predicted Secondary structure 


.............................................................................
Template SS confidence 















































































   295..
 
   281........290.........300.........310.........320.........330.........340.........350.........360
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  NTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGYRTAEVTLGGVDTNELSSRTMEARKVP
Query Conservation                                                               


  
           
 
Alig confidence  .............................................................






.....






Template Conservation  .............................................................
 
 

 .....   

 
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GFIYVDD. . . . . HCKTSVP
Template Known Secondary structure  .............................................................S
B


T.....T
B
SST
Template Predicted Secondary structure  .............................................................



.....






Template SS confidence 















































































   298.300.... .....310.
 
   361........370.........380.........390.........400
Predicted Secondary structure 









Query SS confidence 







































Query Sequence  GLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQDLIAAKSS
Query Conservation 






     
  

     
  

  

  
      
Alig confidence 













.....




















Template Conservation   


 

 
     .....   
  

  

 

 
    
Template Sequence  GVFAIGDVVRGAML. . . . . AHKASEEGVMVAERIAGHKAQ
Template Known Secondary structure  T
GGGSSS


.....TT



Template Predicted Secondary structure 








.....





Template SS confidence 







































   312.......320..... ....330.........340......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions