Job Description P71237 Confidence 71.77% Date Thu Jan 5 12:12:28 GMT 2012 Rank 167 Aligned Residues 297 % Identity 14% Template c3tovB_ PDB info PDB header:transferase Chain: B: PDB Molecule:glycosyl transferase family 9; PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008 Resolution 2.98 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		N	I	L	Q	F	N	V	R	L	A	E	G	G	A	A	G	V	A	L	D	L	H	Q	R	A	L	Q	Q	.	.	G	L	A	S	H	F	V	Y	G	Y	G	K	G	G	K	E	S	V	S	H	Q	N	Y	P	Q	V	I	K	H	T	P	R	M	T	A	M	A	N	I	A	L	F	R	L	F	N	R	D	L	F
Query Conservation																														.	.
Alig confidence											.	.																		.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	V	V	T	F	L	X	H	.	.	L	G	D	V	I	L	T	T	P	F	L	E	V	L	R	K	A	A	P	H	S	H	I	T	Y	V	I	D	E	K	L	Q	Q	V	X	E	Y	N	P	N	I	D	E	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	K	K	G	R	H	N	S	I
Template Known Secondary structure											.	.							T												T	T									G	G	G	G	G	G	T	T	T		T	T		S				.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T	T	S	S
Template Predicted Secondary structure											.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60														.	.	.	.	.	.	.	.	.	70	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	F	N	E	L	Y	R	T	I	T	R	T	A	G	P	V	V	L	H	F	H	V	L	H	S	Y	W	L	N	L	K	S	V	V	R	F	C	E	K	V	K	N	H	K	P	D	V	T	L	V	W	T	L	H	D	H	W	S	V	T	G	R	C	A	F	T	D	G	C	E	G	W	K	T	G	C	Q	K	C
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	G	L	N	E	V	A	R	E	I	N	A	K	G	K	T	D	I	V	I	N	.	.	.	.	.	.	.	.	.	.	.	L	H	P	N	E	R	T	S	Y	L	A	W	K	I	H	A	P	I	T	T	G	X	S	H	F	L	F	R	P	F	X	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																							.	.	.	.	.	.	.	.	.	.	.				S													S								G	G	G	G	G	G		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.												.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.
Query Sequence		P	T	L	N	N	Y	P	P	V	K	I	D	R	A	H	Q	L	V	A	G	K	R	Q	L	F	R	E	M	L	A	L	G	C	Q	F	I	S	P	S	Q	H	V	A	D	A	F	N	S	.	.	.	.	.	.	L	Y	G	P	G	R	C	R	I	I	N	N	G	I	D	M	A	T	E	A	I	L	A	D	L	P
Query Conservation																																																		.	.	.	.	.	.
Alig confidence		.	.																																															.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																																																						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	Y	T	R	L	D	R	K	T	R	H	A	A	D	X	Y	I	N	V	L	E	Q	L	G	V	T	D	T	S	N	S	G	L	H	I	E	I	C	E	E	W	R	C	Q	A	Q	E	F	Y	S	S	H	G	L	T	D	T	D	I	L	I	G	F	N	I	G	S	A	V	P	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.						T	T	T	S														T								S	S																		T	T	T			T	T											S	S	G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
				126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.								.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.
Query Sequence		P	V	R	E	T	Q	G	K	P	K	I	A	V	V	A	H	D	L	R	Y	D	G	K	T	N	Q	Q	L	V	R	E	M	M	A	L	G	D	K	I	E	L	H	T	F	G	K	F	S	P	F	T	.	.	.	.	.	.	.	A	G	N	V	V	N	H	G	F	E	T	D	K	R	K	L	M	S	A	L	N	Q
Query Conservation																																																					.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	R	W	P	A	E	R	F	A	H	V	A	D	Y	F	G	R	L	G	Y	K	T	V	F	F	G	G	P	X	D	L	E	X	V	Q	P	V	V	E	Q	X	E	T	K	P	I	V	A	T	G	K	F	Q	L	G	P	L	A	A	A	X	N	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G																	T	T									G	G	G										T		S	S						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.																						.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																																											.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	A	L	V	F	S	S	R	V	D	N	Y	P	L	I	L	C	E	A	L	S	I	G	V	P	V	I	A	T	H	S	D	A	A	R	E	V	L	Q	K	.	.	S	G	G	K	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	E	E	V	L	Q	L	V	Q
Query Conservation																																											.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.																													.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		C	N	L	L	I	T	N	D	.	.	.	.	.	S	G	P	X	H	V	G	I	S	Q	G	V	P	I	V	A	L	Y	G	P	S	N	P	F	F	Y	G	P	Y	Q	A	H	A	I	V	L	E	T	X	D	S	Y	E	S	X	K	K	I	I	K	E	G	N	Y	K	G	L	S	V	I	S	E	E	Q	V	I	K
Template Known Secondary structure			S						S	.	.	.	.	.	S									T	T									S	S						S			S	S	S						S		S											T					T	T	T	T	S
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		364	.	.	.	.	.	370	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	P	E	I	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	E	T	L	L	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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