Job Description P71237 Confidence 94.94% Date Thu Jan 5 12:12:28 GMT 2012 Rank 60 Aligned Residues 371 % Identity 12% Template c1y6gB_ PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna alpha-glucosyltransferase; PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution Resolution 2.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		M	N	I	L	Q	F	N	V	R	L	A	E	G	.	G	A	A	G	V	A	L	D	L	H	Q	R	A	L	Q	Q	G	L	A	S	H	F	V	Y	G	Y	G	K	G	G	K	E	S	V	S	H	Q	N	Y	P	Q	V	I	K	H	T	P	R	M	T	A	M	A	N	I	A	L	F	R	L	F	N	R	D	L	F
Query Conservation															.
Alig confidence															.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	R	I	C	I	F	M	A	R	G	L	E	G	C	G	V	T	K	F	S	L	E	Q	R	D	W	F	I	K	N	G	H	E	V	T	L	V	Y	A	K	D	K	S	F	T	R	T	S	S	H	D	H	K	S	F	S	I	P	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T				S	S																T	T									T	T	S			T	T	S	S	S	S			T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	F	N	E	L	Y	R	T	I	T	R	T	A	G	P	V	V	L	H	F	H	V	L	H	S	Y	W	L	N	L	K	S	V	V	R	F	C	E	K	V	K	N	H	K	P	D	V	T	L	V	W	T	L	H	D	H	W	S	V	T	G	R	C	A	F	T	D	G	C	E	G	W	K	T	G	C	Q	K	C
Query Conservation
Alig confidence		.																																																								.	.	.	.	.	.	.	.
Template Conservation		.																																																								.	.	.	.	.	.	.	.
Template Sequence		.	L	A	K	E	Y	D	K	A	L	K	L	V	N	D	C	D	I	L	I	I	N	S	V	P	A	T	S	V	Q	E	A	T	I	N	N	Y	K	K	L	L	D	N	I	K	P	S	I	R	V	V	V	Y	Q	H	D	.	.	.	.	.	.	.	.	H	S	V	L	S	L	R	R	N	L	G	L	E	E	T	V
Template Known Secondary structure		.													T	S	S	S									B	T	T	S														S	S		S	S	S									.	.	.	.	.	.	.	.		S					T	T	B	S	S
Template Predicted Secondary structure		.																																																								.	.	.	.	.	.	.	.
Template SS confidence
			1061	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.									.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	L	N	N	Y	P	P	V	K	I	D	R	A	H	Q	L	V	A	G	K	R	Q	L	F	R	E	M	L	A	L	G	C	Q	F	I	S	P	S	Q	H	V	A	D	A	F	N	S	L	Y	G	P	G	R	C	R	I	I	N	N	G	I	D	M	A	T	E	A	I	L	A	D	L	P	P	V	R	E	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	R	A	D	V	I	F	S	H	S	D	N	G	D	F	N	K	V	L	M	K	E	W	Y	P	E	A	P	T	V	Y	N	F	Q	P	P	M	D	I	V	K	V	R	S	T	Y	W	K	D	V	S	E	I	N	M	N	I	N	R	W	I	G	R	T	T	T	W	K	G	F	Y	Q	M	F	D	F	H	E	K	F
Template Known Secondary structure					S					S		T	T	S	T	T	T	T	T						S													B													G	G	G												S	S	G	G	G												T
Template Predicted Secondary structure
Template SS confidence
		1132	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.			.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																																.	.																														.	.	.
Query SS confidence																																																.	.																														.	.	.
Query Sequence		G	K	P	K	I	A	V	V	A	H	D	L	R	Y	D	G	K	T	N	Q	Q	L	V	R	E	M	M	A	L	G	D	K	I	E	L	H	T	F	G	K	F	S	P	F	T	A	.	.	G	N	V	V	N	H	G	F	E	T	D	K	R	K	L	M	S	A	L	N	Q	M	D	A	L	V	F	S	S	.	.	.
Query Conservation																																																.	.																														.	.	.
Alig confidence																			.	.	.	.																										.	.																														.	.	.
Template Conservation																			.	.	.	.
Template Sequence		L	K	P	A	G	K	S	T	V	M	E	G	L	E	R	S	P	.	.	.	.	A	F	I	A	I	K	E	K	G	I	P	Y	E	Y	Y	G	N	R	E	I	D	K	M	N	L	A	P	N	Q	P	A	Q	I	L	D	C	Y	I	N	S	E	M	L	E	R	M	S	K	S	G	F	G	Y	Q	L	S	K	L	N
Template Known Secondary structure		T	G	G	G	T												T	.	.	.	.							T	T	T								T	T	S	G	G	G				S	S	S							S													T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		1222	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.					.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.
					315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.										.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure		.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	R	V	D	N	Y	P	L	I	L	C	E	A	L	S	I	G	V	P	V	I	A	.	.	.	.	.	.	.	.	.	T	H	S	D	A	A	R	E	V	L	Q	K	S	G	G	K	T	V	S	E	E	E	V	L	Q	L	V	Q	L	S	K	P	E	I	A	Q	A	I	F	G	T	T	L	A	E	F	S
Query Conservation		.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	K	Y	L	Q	R	S	L	E	Y	T	H	L	E	L	G	A	C	G	T	I	P	V	F	W	K	S	T	G	E	N	L	K	F	R	V	D	N	T	P	L	T	S	H	D	S	G	I	I	W	F	D	E	N	D	M	E	S	T	F	E	R	I	K	E	L	S	S	D	R	A	L	Y	D	R	E	R	E	K	A
Template Known Secondary structure		G	G	G		S	S												T	T	S					B								B		S	S	S			B	S	S	S	S							B		S	S	S													S
Template Predicted Secondary structure
Template SS confidence
		1298	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.
		383	.		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		Q	R	.	S	R	A	A	Y	S	G	Q	Q	M	L	E	E	Y	V	N	F	Y	Q	N
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		Y	E	F	L	Y	Q	H	Q	D	S	S	F	C	F	K	E	Q	F	D	I	I	T	K
Template Known Secondary structure										B
Template Predicted Secondary structure
Template SS confidence
		1378	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400