 |
Job Description | P37309 | Confidence | 97.57% | Date | Thu Jan 5 11:55:08 GMT 2012 |
Rank | 138 | Aligned Residues | 84 |
% Identity | 18% | Template | c3ecoB_ |
PDB info |
PDB header:transcription | Chain: B: PDB Molecule:mepr; |
PDBTitle: crystal structure of mepr, a transcription regulator of the2 staphylococcus aureus multidrug efflux pump mepa
|
Resolution | 2.40 Å |
|
 |
  |   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | |
|
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | E | T | R | L | G | I | V | L | L | L | S | E | L | G | E | . |
. |
L | C | V | C | D | L | C | T | A | L | D | Q | S | Q | P | K | I | S | R | H | L | A | L | L | R | E | S | G | L | L | L | D | R | K | Q | G | K | W | V | H | Y | R | L | S | P | H | I | P | A | W | A | A | K | I | I | D | E | A | W | R | C | E |
Query Conservation |   |
  |
|   |
|
|   |
|
|   |   |
|   |   |   |   |   | . | . |   |
|
|   |
|
|   |   |   |
|   |   |
|   |
|   |
|
|   |
|
|   |   |
|   |   |   |
|
|
|   |   |   |
|   |
|
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |   |
|   |
|   |
|
|   |   | . | . | . | . |   |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | N | E | Q | G | H | T | L | G | Y | L | Y | A | H | Q | Q | D | G | L | T | Q | N | D | I | A | K | A | L | Q | R | T | G | P | T | V | S | N | L | L | R | N | L | E | R | K | K | L | I | Y | R | Y | V | K | . |
. |
. |
. |
N | I | G | L | T | T | S | G | I | K | L | V | E | A | F | T | S | I | F | D | E | M | E |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  | S |
| T | T |
| B |
|  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |  |  |  |  |
|
| . | . | . | . |  |  |  |  |
|  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | |
|
|
|
. | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . |
  |
  |   |
93 | . | . | . | . | . | . | 100 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | E | K | V | Q | A | I | V | R | N |
Query Conservation |   |
  |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |   |
|
Template Sequence |   |
Q | T | L | V | S | Q | L | S | E | E |
Template Known Secondary structure |   |
 |  |  |  | T | T | S |
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
  |   |
113 | . | . | . | . | . | . | 120 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|