Job Description P09378 Confidence 62.91% Date Thu Jan 5 11:02:17 GMT 2012 Rank 427 Aligned Residues 157 % Identity 7% Template c2fmyB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:carbon monoxide oxidation system transcription regulator PDBTitle: co-dependent transcription factor cooa from carboxydothermus2 hydrogenoformans (imidazole-bound form) Resolution 2.20 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	Y	R	I	T	R	G	D	L	F	Y	I	H	A	D	D	K	H	S	Y	A	S	V	N	D	L	V	L	Q	N	I	I	Y	C	P	E	R	L	K	L	N	L	D	W	Q	G	A	I	P	G	F	N	A	S	A	G	Q	P	H	W	R	L	G	S	M	G	M	A	Q	A	R	Q	V	I	G	Q	L	E	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	Q	R	Y	S	K	K	A	I	L	Y	T	P	N	T	E	R	N	L	V	F	L	V	K	S	G	R	V	R	V	Y	L	A	Y	E	D	K	E	F	T	L	A	I	L	E	A	G	D	I	F	C	T	H	T	R	A	F	I	Q	A	M	E	D	T	T	I	L	Y	T	D	I	R	N	F	Q	N	I	V	V
Template Known Secondary structure								T	T						S	S		S	S									S									S	S										T	T					S		S	S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		1029	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.
Query Sequence		E	S	S	Q	H	V	P	F	A	N	E	M	A	E	L	L	F	G	Q	L	V	M	L	L	N	R	H	R	Y	T	S	D	S	L	P	P	T	S	S	E	T	L	L	D	K	L	I	T	R	L	A	A	S	L	K	S	.	.	.	.	.	.	P	F	A	L	D	K	F	C	D	E	A	S	C	S	E	R	V	L
Query Conservation																																																										.	.	.	.	.	.
Alig confidence			.	.	.																																																					.	.	.	.	.	.
Template Conservation			.	.	.
Template Sequence		E	.	.	.	F	P	A	F	S	L	N	M	V	K	V	L	G	D	L	L	K	N	S	L	T	I	I	N	G	L	V	F	K	D	A	R	L	R	L	A	E	F	L	V	Q	A	A	M	D	T	G	L	K	V	P	Q	G	I	K	L	E	L	G	L	N	T	E	E	I	A	L	M	L	G	T	T	R	Q	T	V
Template Known Secondary structure			.	.	.		T																										T																							T	T							S											T	S
Template Predicted Secondary structure			.	.	.
Template SS confidence
		1109				1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.
		210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	Q	F	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	L	L	N	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1186	.	.	.	1190	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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