Job Description P0A6H1 Confidence 99.94% Date Thu Jan 5 11:03:08 GMT 2012 Rank 11 Aligned Residues 229 % Identity 19% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	Y	V	I	G	Q	E	Q	A	K	K	V	L	A	V	A	V	Y	N	H	Y	K	R	L	R	N	G	D	T	S	N	G	V	E	L	G	K	S	N	I	L	L	I	G	P	T	G	S	G	K	T	L	L	A	E	T	L	A	R	L	L	D	V	P	F	T	M	A	D	A	T	T	L	T	E	A	G	Y	V
Query Conservation
Alig confidence																				.	.																																																										.
Template Conservation																				.	.																																																										.
Template Sequence		W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	.	.	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L	F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	Q	A	N	F	I	S	I	K	G	P	E	L	L	T	M	.	W	F
Template Known Secondary structure		T	T	T	T		S													.	.												T	S						S								T	T	S													T	T															.		T
Template Predicted Secondary structure																				.	.																																																										.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.			.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	D	V	E	N	I	I	Q	K	L	L	Q	K	C	D	Y	D	V	Q	K	A	Q	R	G	I	V	Y	I	D	E	I	D	K	I	S	R	K	S	D	N	P	S	I	T	R	D	V	S	G	E	G	V	Q	Q	A	L	L	K	L	I	E	G	T	V	A	A	V	P	P	Q	G	G	R	K	H	P	Q	Q	E
Query Conservation
Alig confidence					.											.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.											.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	S	.	E	A	N	V	R	E	I	F	D	K	.	.	.	.	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D	S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	M	S	T	K	.	.	.	.	.	.	.	.	.	.	.	K	N
Template Known Secondary structure		T	T		.	T							T	T	T	.	.	.	.	T	T	T	T		S						S	S	G	G	G	G					T	T	T	T		S	S			S														S	S		T	T	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure					.											.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		553	.	.		.	.	.	.	560	.	.	.	.	.					.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.												.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	Q	V	D	T	S	K	I	L	F	I	C	G	G	A	F	A	G	L	D	K	V	I	S	H	R	V	E	T	G	S	G	I	G	F	G	A	T	V	K	A	K	S	D	K	A	S	E	G	E	L	L	A	Q	V	E	P	E	D	L	I	K	F	G	L	I	P	E	F	I	G	R	L	P	V	V	A	T	L
Query Conservation
Alig confidence										.	.	.	.	.	.	.																						.	.	.	.	.																																		.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.																						.	.	.	.	.																																		.	.	.	.	.
Template Sequence		V	F	I	I	G	A	T	N	.	.	.	.	.	.	.	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y	I	.	.	.	.	.	P	L	P	D	E	K	S	R	V	A	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	D	L	E	F	L	A	K	M	.	.	.	.	.	T
Template Known Secondary structure									S	.	.	.	.	.	.	.		G	G	G			G	G	G	T	S	T	T	T	S							.	.	.	.	.					T	T										T	T	T	S		B		S	S							T	T	T	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.																						.	.	.	.	.																																		.	.	.	.	.
Template SS confidence
		617	.	.	620	.	.	.	.								.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.						.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.						.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	L	S	E	E	A	L	I	Q	I	L	K	E	P	K	N	A	L	T	K	Q	Y	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E
Template Known Secondary structure		S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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