 |
Job Description | P0A6H1 | Confidence | 97.46% | Date | Thu Jan 5 11:03:08 GMT 2012 |
Rank | 217 | Aligned Residues | 79 |
% Identity | 22% | Template | c3b9qA_ |
PDB info |
PDB header:protein transport | Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit |
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
|
Resolution | 1.75 Å |
|
 |
  |   |
68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | |
|
|
. | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
Query Sequence |   |
H | E | I | R | N | H | L | D | D | Y | V | I | G | Q | . |
. |
. |
. |
. |
E | Q | A | K | K | V | L | A | V | A | V | Y | N | H | Y | K | R | L | R | N | G | D | T | S | N | G | V | E | L | G | K | S | N | I | L | L | I | G | P | T | G | S | G | K | T | L | L | A | E | T | L | A | R | L | L | . |
. |
. |
D | V | P |
Query Conservation |   |
  |   |
|   |   |   |
|   |   |   |
|
|
|
| . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|
|
|   |   |
|   |   |   |
|   |   |   | . | . | . |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |
|
|   |   |
|
|   |   |
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |   |
|   |   |
Template Sequence |   |
V | R | I | V | E | R | L | R | E | D | I | M | S | G | K | L | K | S | G | S | E | I | K | D | A | L | K | E | S | V | L | E | M | L | A | K | S | K | T | E | L | Q | L | G | F | R | K | P | A | . |
. |
V | I | M | I | V | G | V | N | G | G | G | K | T | T | S | L | G | K | L | A | H | R | L | K | N | E | G | T | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| S |
|
|
|
| S | S | S |
|  | . | . |  |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  | . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
|
. | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . |
  |
  |   |
140 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | T | M | A | D | A | T | T | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |   |
|
|   |
Template Sequence |   |
V | L | M | A | A | G | D | T | F |
Template Known Secondary structure |   |
 |  |  |  |
|
|
|
| S |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
195 | . | . | . | . | 200 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|