Job Description P0A6H1 Confidence 99.40% Date Thu Jan 5 11:03:08 GMT 2012 Rank 77 Aligned Residues 200 % Identity 22% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		74	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure											.	.																																																							.	.	.	.	.
Query SS confidence											.	.																																																							.	.	.	.	.
Query Sequence		L	D	D	Y	V	I	G	Q	E	.	.	Q	A	K	K	V	L	A	V	A	V	Y	N	H	Y	K	R	L	R	N	G	D	T	S	N	G	V	E	L	G	K	S	N	I	L	L	I	G	P	T	G	S	G	K	T	L	L	A	E	T	L	A	R	L	L	.	.	.	.	.	D	V	P	F	T	M	A	D	A	T
Query Conservation											.	.																																																							.	.	.	.	.
Alig confidence											.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	E	N	F	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E
Template Known Secondary structure		G	G	G					T	T	T													S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S								S	S	S	S	S																S	S	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.															.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	E	A	G	Y	V	G	E	D	V	E	N	I	I	Q	K	L	L	Q	K	C	D	Y	D	V	Q	K	A	Q	R	G	I	V	Y	I	D	E	I	D	K	I	S	R	K	S	D	N	P	S	I	T	R	D	V	S	G	E	G	V	Q	Q	A	L	L	K	L	I	E	G	T	V	A	A	V	P	P	Q	G
Query Conservation
Alig confidence					.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	L	.	.	.	.	.	.	N	D	L	V	D	S	M	K	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	.	.	.	.	.	.	.	.	.	.	.	.	T	G	V	Q	T	E	L	F	H	T	F	N	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.	.	.	.									T	S										T	T	T		S							G	G	G	G	T	T		.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.							.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.													210	.	.	.	.	.	.	.	.	.	220	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	K	H	P	Q	Q	E	F	L	Q	V	D	T	S	K	I	L	F	I	C	G	G	A	F	A	G	L	D	K	V	I	S	H	R	V	E	T	G	S	G	I	G	F	G	A	T	V	K	A	K	S	D	K	A	S	E	G	E	L	L	A	Q	V	E	P	E	D	L	I	K	F	G	L	I	P	E	F	I	G
Query Conservation
Alig confidence		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.				T	T	T								S	S		T	T	T		S	S											S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	P	V	V	A	T	L	N	E	L	S	E	E	A	L	I	Q	I	L	K	E	P	K	N	A	L	T	K	Q	Y	Q	A	L	F	N	L	E	G	V	D	L	E	F	R	D	E	A	L	D	A	I	A	K	K	A	M	A	R	K	T	G	A	R	G	L	R	S	I	V	E	A	A	L
Query Conservation
Alig confidence		.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation		.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template Sequence		.	.	.	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	.	.	.	V	D	D	N	L	R	R	L	R	G	A	I	I	K	L	L
Template Known Secondary structure		.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	T					T	T									.	.	.			S
Template Predicted Secondary structure		.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.
Template SS confidence
					256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.														280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions