Job Description P0A6H1 Confidence 99.77% Date Thu Jan 5 11:03:08 GMT 2012 Rank 34 Aligned Residues 216 % Identity 22% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	Q	E	Q	A	K	K	V	L	A	V	A	V	Y	N	H	Y	K	R	L	R	N	G	D	T	S	N	G	V	E	L	G	K	S	N	I	L	L	I	G	P	T	G	S	G	K	T	L	L	A	E	T	L	A	R	L	L	D	V	P	F	T	M	A	D	A	T	T	L	T	E	A	G	Y	V	G	E	D
Query Conservation
Alig confidence																																				.	.																																											.	.
Template Conservation																																				.	.																																											.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	.	.	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	.	.
Template Known Secondary structure																	T					S							T	T					S	.	.						S	S	T	T	S													T	T								T	T	T	T		S	S	T	T			.	.
Template Predicted Secondary structure																																				.	.																																											.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.			.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	N	I	I	Q	K	L	L	Q	K	C	D	Y	D	V	Q	K	A	Q	R	G	I	V	Y	I	D	E	I	D	K	I	S	R	K	S	D	N	P	S	I	T	R	D	V	S	G	E	G	V	Q	Q	A	L	L	K	L	I	E	G	T	V	A	A	V	P	P	Q	G	G	R	K	H	P	Q	Q	E	F	L	Q
Query Conservation
Alig confidence		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	S	E	R	A	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	.	.	.	.	.	.	.	.	.	.	.	.	V	R	V	V	N	Q	L	L	T	E	M	D	.	.	.	.	.	.	.	.	.	.	.	G	L	E	A	R	Q	Q	V	F	I
Template Known Secondary structure		.	.	.	.															T		S							T		T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	T	T											.	.	.	.	.	.	.	.	.	.	.	T			S	T	T
Template Predicted Secondary structure		.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.													690	.	.	.	.	.	.	.	.	.	700	.												.	.	.	.	.	.	.	.	710	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	T	S	K	I	L	F	I	C	G	G	A	F	A	G	L	D	K	V	I	S	H	R	V	E	T	G	S	G	I	G	F	G	A	T	V	K	A	K	S	D	K	A	S	E	G	E	L	L	A	Q	V	E	P	E	D	L	I	K	F	G	L	I	P	E	F	I	G	R	L	P	V	V	A	T	L	N	E	L
Query Conservation
Alig confidence							.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	A	T	N	.	.	.	.	.	.	.	R	P	D	I	I	D	P	A	I	L	R	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	L	D	K	T	L	F	V	G	L	P
Template Known Secondary structure						S	.	.	.	.	.	.	.		G	G	G	S						S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S								S
Template Predicted Secondary structure							.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		721	.	.	.	.								.	.	.	.	730	.	.	.	.	.	.	.																																													.	.	740	.	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	E	A	L	I	Q	I	L	K	E	P	K	N	A	L	T	K	Q	Y	Q	A	L	F	N	L	E	G	V	D	L	E	F	R	D	E	A	L	D	A	I	A	K	K	A	M	A	R	K	T	G	A	R	G	L	R	S	I	V	E	A	A	L	L	D	T	M	Y	D
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	P	A	D	R	L	A	I	L	.	.	.	.	.	.	.	.	.	.	.	K	T	I	T	K	N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V	R	E	A	S	I	C	A	L	R	Q
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	.				T	T	T	T	B	T	T	B	B		T	T								T		S	G	G	G	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		750	.	.	.	.	.	.	.	.												.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions