Job Description P0A6H1 Confidence 98.26% Date Thu Jan 5 11:03:08 GMT 2012 Rank 104 Aligned Residues 173 % Identity 13% Template c2gxaA_ PDB info PDB header:replication/dna Chain: A: PDB Molecule:replication protein e1; PDBTitle: crystal structure of papillomavirus e1 hexameric helicase2 with ssdna and mgadp Resolution 3.15 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																								.	.	.
Query SS confidence																																																								.	.	.
Query Sequence		L	I	A	G	P	S	V	Y	I	C	D	E	C	V	D	L	C	N	D	I	I	R	E	E	I	K	E	V	A	P	H	R	E	R	S	A	L	P	T	P	H	E	I	R	N	H	L	D	D	Y	V	I	G	Q	.	.	.	E	Q	A	K	K	V	L	A	V	A	V	Y	N	H	Y	K	R	L	R	N	G	D	T
Query Conservation																																																								.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	T	N	S	Q	A	K	H	V	K	D	C	A	T	M	V	R	H	Y	L	R	A	E	T	Q	A	L	.	.	.	.	.	.	.	.	.	.	S	M	P	A	Y	I	K	A	R	C	K	L	A	T	G	E	G	S	W	K	S	I	L	T	F	F	N	Y	Q	N	I	E	L	I	T	F	I	N	A	L	K	L
Template Known Secondary structure					S																								S	.	.	.	.	.	.	.	.	.	.															S														T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.											.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	G	V	E	L	G	K	S	N	I	L	L	I	G	P	T	G	S	G	K	T	L	L	A	E	T	L	A	R	L	L	D	V	P	F	T	M	A	D	A	T	T	L	T	E	A	G	Y	V	G	E	D	V	E	N	I	I	Q	K	L	L	Q	K	C	D	Y	D	V	Q	K	A	Q	R	G	I	V	Y	I	D
Query Conservation
Alig confidence																																			.	.						.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.						.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		W	L	K	G	I	P	K	K	N	C	L	A	F	I	G	P	P	N	T	G	K	S	M	L	C	N	S	L	I	H	F	L	G	.	.	G	S	V	L	S	.	.	.	.	.	.	.	.	F	A	N	H	K	S	H	F	W	L	A	S	L	A	D	T	R	.	.	.	.	.	.	.	.	.	.	A	A	L	V	D
Template Known Secondary structure				T	T		T	T									S	S	S	S	S												T	T	.	.						.	.	.	.	.	.	.	.	T	T	S		T	T	S		T	T	S	G	G	G	T		S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.						.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.									.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.											.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	D	K	I	S	R	K	S	D	N	P	S	I	T	R	D	V	S	G	E	G	V	Q	Q	A	L	L	K	L	I	E	G	T	V	A	A	V	P	P	Q	G	G	R	K	H	P	Q	Q	E	F	L	Q	V	D	T	S	K	I
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	T	H	A	C	W	R	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	T	Y	L	R	N	A	L	D	G	Y	P	V	S	I	D	R	K	H	K	A	A	V	Q	I	K	A	P	P	L	L	V	T	S	N	I
Template Known Secondary structure		S									.	.	.	.	.	.	.	.	.	.	.	.	.				T	T						S	S							S	S	S															S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		479	480	.	.	.	.	.	.	.														.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions