Job Description P0A6H1 Confidence 99.45% Date Thu Jan 5 11:03:08 GMT 2012 Rank 70 Aligned Residues 125 % Identity 26% Template c1sxjD_ PDB info PDB header:replication Chain: D: PDB Molecule:activator 1 41 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.							.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence		D	Y	V	I	G	Q	E	Q	A	K	K	V	L	A	V	A	V	Y	N	H	Y	K	R	L	R	N	G	D	T	S	N	G	V	E	L	G	K	S	N	I	L	L	I	G	P	T	G	S	G	K	T	L	L	A	E	T	L	A	R	L	L	.	.	.	.	.	.	D	V	P	F	T	M	A	D	A	T	T	L	T
Query Conservation																																																															.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.							.	.																								.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template Sequence		D	E	V	T	A	Q	D	H	A	V	T	V	L	K	K	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	A	N	L	P	.	.	H	M	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	L	A	L	T	K	E	L	Y	G	P	D	L	M	K	S	R	I	L	E	L	N	A	S	D	E	R
Template Known Secondary structure		T	T			S			T	T								T	.	.	.	.	.	.	.	.	.	.	.	.	.	T		T	T			.	.							S	T	T	S	S																			T	T	S						S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.							.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.														.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		E	A	G	Y	V	G	E	D	V	E	N	I	I	Q	K	L	L	.	.	.	.	Q	K	C	D	Y	D	V	Q	K	A	Q	R	G	I	V	Y	I	D	E	I	D	K	I	S	R	K	S	D	N	P	S	I	T	R	D	V	S	G	E	G	V	Q	Q	A	L	L	K	L	I	E	G	T	V	A	A	V	P	P	Q
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Sequence		G	I	S	I	V	R	E	K	V	K	N	F	A	R	L	T	V	S	K	P	S	K	H	D	L	E	N	Y	P	C	P	P	Y	K	I	I	I	L	D	E	A	D	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	D	A	Q	S	A	L	R	R	T	M	E	T	Y	S	G	V	.	.	.	.
Template Known Secondary structure							T	T								S							T	T					S				S							T	T	G	G	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T	T	T	T	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.															.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	R	K	H	P	Q	Q	E	F	L	Q	V	D	T	S	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	T	R	F	C	L	I	C	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											164	.	.	.	.	.	170	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions