Job Description P0A6H1 Confidence 97.47% Date Thu Jan 5 11:03:08 GMT 2012 Rank 215 Aligned Residues 145 % Identity 17% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	C	V	D	L	C	N	D	I	I	R	E	E	I	K	E	V	A	P	H	R	E	R	S	A	L	P	T	P	H	E	I	R	N	H	L	D	D	Y	V	I	G	Q	E	Q	A	K	K	V	L	A	V	A	V	Y	N	H	Y	K	R	L	R	N	G	D	T	S	N	G	V	E	L	G	K	S	N	I	L	L
Query Conservation
Alig confidence																																																											.	.
Template Conservation																																																											.	.
Template Sequence		D	E	F	I	K	D	L	Q	K	S	L	I	S	S	D	V	N	V	K	L	V	F	S	L	T	A	K	I	K	E	R	L	N	K	E	K	P	P	S	V	L	E	R	K	E	W	F	I	S	I	V	Y	D	E	L	S	K	.	.	L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L
Template Known Secondary structure														T	S	S																		T	T					S	S	S																	.	.		T	T		S						S		S	S	S	S
Template Predicted Secondary structure																																																											.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.															.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																					.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	P	T	G	S	G	K	T	L	L	A	E	T	L	A	R	L	L	.	.	.	D	V	P	F	T	M	A	D	A	T	T	L	T	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	V	G	E	D	V	E	N	I	I	Q	K	L	L	Q	K	C	D	Y	D	V	Q	K	A	Q	R	G	I
Query Conservation																					.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I
Template Known Secondary structure				S	S	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S											T	T							S	S				T	T													T	T		S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		181	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	I	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions