Job Description P0A6H1 Confidence 99.91% Date Thu Jan 5 11:03:08 GMT 2012 Rank 12 Aligned Residues 286 % Identity 19% Template c1ny5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state Resolution 2.40 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Y	C	S	F	C	G	K	S	Q	H	E	V	R	K	L	I	A	G	P	S	V	Y	I	C	D	E	C	V	D	L	C	N	D	I	I	R	E	E	I	K	E	V	A	P	H	R	E	R	S	A	L	P	T	P	H	E	I	R	N	H	L	D	D	Y	V	I	G	Q	E	Q	A	K	K	V	L	A	V	A
Query Conservation
Alig confidence																																	.	.
Template Conservation																																	.	.
Template Sequence		V	I	V	I	T	G	H	G	T	I	K	T	A	V	E	A	M	K	M	G	A	Y	D	F	L	T	K	P	C	M	L	.	.	E	E	I	E	L	T	I	N	K	A	I	E	H	R	K	L	R	K	E	N	E	L	L	R	R	E	K	D	L	K	E	E	E	Y	V	F	E	S	P	K	M	K	E	I	L	E	K
Template Known Secondary structure								T	T										T	T	T								S				.	.																													T	T								S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																															.	.	.															.	.	.	.
Query SS confidence																																															.	.	.															.	.	.	.
Query Sequence		V	Y	N	H	Y	K	R	L	R	N	G	D	T	S	N	G	V	E	L	G	K	S	N	I	L	L	I	G	P	T	G	S	G	K	T	L	L	A	E	T	L	A	R	L	L	.	.	.	D	V	P	F	T	M	A	D	A	T	T	L	T	E	.	.	.	.	A	G	Y	V	G	E	D	V	E	N	I	I	Q	K
Query Conservation																																															.	.	.															.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.															.	.	.	.											.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.
Template Sequence		I	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	I	S	C	A	E	C	P	V	L	I	T	G	E	S	G	V	G	K	E	V	V	A	R	L	I	H	K	L	S	D	R	S	K	E	P	F	V	A	L	N	V	A	S	I	P	R	D	I	F	E	A	E	L	F	G	Y	E	K	G	A	.	F	T	G
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.				T	T			S							S	T	T	S	S												S	T	T	T	T	S							T	T	T	S												B		T	T	S	.	S	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.																																																															.
Template SS confidence
		153														.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Q	K	C	D	Y	D	V	Q	K	A	Q	R	G	I	V	Y	I	D	E	I	D	K	I	S	R	K	S	D	N	P	S	I	T	R	D	V	S	G	E	G	V	Q	Q	A	L	L	K	L	I	E	G	T	V	A	A	V	P	P	Q	G	G	R	K	H	P	Q	Q	E	F	L	Q	V	D	T	S	K	I	L
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.																										.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.																										.
Template Sequence		A	V	S	S	K	E	G	F	F	E	L	A	D	G	G	T	L	F	L	D	E	I	G	E	L	S	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	A	K	L	L	R	V	I	E	.	.	S	G	K	F	Y	R	L	G	G	R	K	E	I	E	V	N	V	R	I	L	A	A	T	N	R	.
Template Known Secondary structure				S		B							T	T	T	S						S	G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.		S					B	T			S													S	S	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.																										.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.															.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	C	G	G	A	F	A	G	L	D	K	V	I	S	H	R	V	E	T	G	S	G	I	G	F	G	A	T	V	K	A	K	S	D	K	A	S	E	G	E	L	L	A	Q	V	E	P	E	D	L	I	K	F	G	L	I	P	E	F	I	G	R	L	P	V	V	A	T	L	N	E	L	S	E	E	A	L	I	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	K	E	L	V	K	E	G	K	F	R	E	D	L	Y	Y	R	L	G	V	I	E	I	E	I	P	P	L	R	E	R	K	E	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	S	S									T	T								G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																															282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		I	L	K	E	P	K	N	A	L	T	K	Q	Y	Q	A	L	F	N	L	E	G	V	D	L	.	E	F	R	D	E	A	L	D	A	I	A	K	K	A	M	A	R	K	T	G	A	R	G	L	R	S	I	V	E	A	A	L	L
Query Conservation																										.
Alig confidence																	.	.	.	.						.																				.	.
Template Conservation																	.	.	.	.																										.	.
Template Sequence		I	I	P	L	A	N	H	F	L	K	K	F	S	R	K	.	.	.	.	Y	A	K	E	V	E	G	F	T	K	S	A	Q	E	L	L	L	S	Y	P	W	Y	G	N	V	.	.	R	E	L	K	N	V	I	E	R	A	V	L
Template Known Secondary structure																	.	.	.	.	T	T																	S			T	T			.	.
Template Predicted Secondary structure																	.	.	.	.																										.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.					.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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