Job Description P27550 Confidence 100.00% Date Thu Jan 5 11:44:02 GMT 2012 Rank 22 Aligned Residues 456 % Identity 23% Template c3nyrA_ PDB info PDB header:ligase Chain: A: PDB Molecule:malonyl-coa ligase; PDBTitle: malonyl-coa ligase ternary product complex with malonyl-coa and amp2 bound Resolution 1.45 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	L	D	R	H	L	Q	E	N	G	D	R	T	A	I	I	W	E	G	D	D	A	S	Q	S	K	H	I	S	Y	K	E	L	H	R	D	V	C	R	F	A	N	T	L	L	E	L	G	I	K	K	G	D	V	V	A	I	Y	M	P	M	V	P	E	A	A	V	A	M	L	A	C	A	R	I	G	A	V	H
Query Conservation
Alig confidence																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Sequence		A	L	S	P	A	P	T	G	A	P	A	D	R	P	A	L	R	F	.	.	.	.	.	.	G	E	R	S	L	T	Y	A	E	L	A	A	A	A	G	A	T	A	G	R	I	.	.	.	.	.	.	.	.	G	R	V	A	V	W	A	T	P	A	M	E	T	G	V	A	V	V	A	A	L	L	A	G	V	A	A
Template Known Secondary structure		T	T	S	S								T	S						.	.	.	.	.	.	T	T																		T		.	.	.	.	.	.	.	.									S	S														T
Template Predicted Secondary structure																				.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.									.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	F	G	G	F	S	P	E	A	V	A	G	R	I	I	D	S	N	S	R	L	V	I	T	S	D	E	G	V	R	A	G	R	S	I	P	L	K	K	N	V	D	D	A	L	K	N	P	N	V	T	S	V	E	H	V	V	V	L	K	R	T	G	G	K	I	D	W	Q	E	G	R	D	L	W	W	H	D
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	L	N	P	K	S	G	D	K	E	L	A	H	I	L	S	D	S	A	P	S	L	V	L	A	P	P	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	P	P	A	L	G	A	L	E	R	V	D
Template Known Secondary structure						T	T																S						T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G	T	T	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																																						.	.	.	.	110	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	Q	A	S	D	Q	H	Q	A	E	E	M	N	A	E	D	P	L	F	I	L	Y	T	S	G	S	T	G	K	P	K	G	V	L	H	T	T	G	G	Y	L	V	Y	A	A	L	T	F	K	Y	V	F	D	Y	H	P	G	D	I	Y	W	C	T	A	D	V	G	W	V	T	G	H	S	Y	L	L	Y	G
Query Conservation
Alig confidence																																																		.
Template Conservation																																																		.
Template Sequence		V	D	V	R	A	R	G	A	V	P	E	D	G	A	D	D	G	D	P	A	L	V	V	Y	T	S	G	T	T	G	P	P	K	G	A	V	I	P	R	R	A	L	A	T	T	L	D	A	.	L	A	D	A	W	Q	W	T	G	E	D	V	L	V	Q	G	L	P	L	F	H	V	H	G	L	V	L	G	I	L	G
Template Known Secondary structure				T	T												T	T	S										S	S	S	S																		.						T			T	T									T	T	S					T	T	T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	C	G	A	T	T	L	M	F	E	G	V	P	N	W	P	T	P	A	R	M	A	Q	V	V	D	K	H	Q	V	N	I	L	Y	T	A	P	T	A	I	R	A	L	M	A	E	G	D	K	A	I	E	G	T	D	R	S	S	L	R	I	L	G	S	V	G	E	P	I	N	P	E	A	W	E	W	Y	W
Query Conservation
Alig confidence														.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		P	L	R	R	G	G	S	V	R	H	L	G	.	.	.	.	R	F	S	T	E	G	A	A	R	E	L	N	D	G	A	T	M	L	F	G	V	P	T	M	Y	H	R	I	A	E	T	L	P	A	D	P	E	L	A	K	A	L	A	G	A	R	L	L	V	S	G	S	A	A	L	P	V	H	D	H	E	R	I	A
Template Known Secondary structure						T							S	.	.	.	.	S											T	T	T																		G	G	G												S						S	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	I	G	N	E	K	C	P	V	V	D	T	W	W	Q	T	E	T	G	G	F	M	I	T	P	L	P	G	A	T	E	L	K	A	G	S	A	T	R	P	F	F	G	V	Q	P	A	L	V	D	N	E	G	N	P	L	E	G	A	T	E	G	S	L	V	I	T	D	S	W	P	G	Q	A	R	T	L	F	G
Query Conservation
Alig confidence					.	.	.																						.	.																								.	.																		.	.
Template Conservation					.	.	.																						.	.																								.	.																		.	.
Template Sequence		A	A	T	.	.	.	G	R	R	V	I	E	R	Y	G	M	T	E	T	L	M	N	T	S	V	R	A	.	.	D	G	E	P	R	A	G	T	V	G	V	P	L	P	G	V	E	L	R	L	V	P	I	.	.	A	A	L	D	G	E	S	V	G	E	I	Q	V	R	G	P	N	.	.	L	F	T	E	Y	L	N
Template Known Secondary structure					.	.	.	S										G	G	G								T	.	.	T	S				T	T							T	T									.	.					S										S	T	T	.	.	S					T	T
Template Predicted Secondary structure					.	.	.																						.	.																								.	.																		.	.
Template SS confidence
		274	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		D	H	E	R	F	E	Q	T	Y	F	S	T	F	K	N	M	Y	F	S	G	D	G	A	R	R	D	E	D	G	Y	Y	W	I	T	G	R	V	.	D	D	V	L	N	V	S	G	H	R	L	G	T	A	E	I	E	S	A	L	V	A	H	P	K	I	A	E	A	A	V	V	G	I	P	H	N	I	K	G	Q	A
Query Conservation																																							.
Alig confidence											.	.																											.
Template Conservation											.	.
Template Sequence		R	P	D	A	T	A	A	A	F	.	.	T	E	D	G	F	F	R	T	G	D	M	A	V	R	D	P	D	G	Y	V	R	I	V	G	R	K	A	T	D	L	I	K	S	G	G	Y	K	I	G	A	G	E	I	E	N	A	L	L	E	H	P	E	V	R	E	A	A	V	T	G	E	P	D	P	D	L	G	E	R
Template Known Secondary structure									T	B	.	.		T	T	S												T	T	S								S	S							T	T													T	T	S	T	T												T	T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	A	Y	V	T	L	N	H	G	E	E	P	S	P	E	L	Y	A	E	V	R	N	W	V	R	K	E	I	G	P	L	A	T	P	D	V	L	H	W	T	D	S	L	P	K
Query Conservation
Alig confidence																	.	.
Template Conservation																	.	.
Template Sequence		I	V	A	W	I	V	P	A	D	P	A	A	P	P	A	.	.	L	G	T	L	A	D	H	V	A	A	R	L	A	P	H	K	R	P	R	V	V	R	Y	L	D	A	V	P	R
Template Known Secondary structure									S	S	T	T	S				.	.												T		G	G	G	S		S						S
Template Predicted Secondary structure																	.	.
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.			.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.