Job Description P27550 Confidence 100.00% Date Thu Jan 5 11:44:02 GMT 2012 Rank 24 Aligned Residues 484 % Identity 18% Template c3g7sA_ PDB info PDB header:ligase Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1); PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus Resolution 2.15 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		P	G	N	V	S	I	K	W	Y	E	D	G	T	L	N	L	A	A	N	C	L	D	R	H	L	Q	E	N	G	D	R	T	A	I	I	W	E	G	D	D	A	.	.	S	Q	S	K	H	I	S	Y	K	E	L	H	R	D	V	C	R	F	A	N	T	L	L	E	L	G	I	K	K	G	D	V	V	A	I	Y	M
Query Conservation																																											.	.
Alig confidence																.	.	.																									.	.
Template Conservation																.	.	.
Template Sequence		K	I	G	F	P	S	L	Y	Y	P	K	I	S	L	.	.	.	A	D	R	I	D	A	A	A	E	K	F	G	E	K	T	A	I	I	S	A	E	P	K	F	P	S	E	F	P	E	S	X	N	F	L	E	I	C	E	V	T	K	K	L	A	S	G	I	S	R	K	G	V	R	K	G	E	H	V	G	V	C	I
Template Known Secondary structure															T	.	.	.	T											T	T	S							S	S					S	S		S																					T	T			T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.				20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	V	P	E	A	A	V	A	M	L	A	C	A	R	I	G	A	V	H	S	V	I	F	G	G	F	S	P	E	A	V	A	G	R	I	I	D	S	N	S	R	L	V	I	T	S	D	E	G	V	R	A	G	R	S	I	P	L	K	K	N	V	D	D	A	L	K	N	P	N	V	T	S	V	E	H	V	V	V
Query Conservation
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	S	I	D	Y	V	X	T	I	Y	A	L	W	R	V	A	A	T	P	V	P	I	N	P	X	Y	K	S	F	E	L	E	H	I	L	N	D	S	E	A	T	T	L	V	V	H	S	X	L	Y	E	N	F	K	P	V	L	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S													T	T								T	T													T	T		S						G	G	G									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	T	G	G	K	I	D	W	Q	E	G	R	D	L	W	W	H	D	L	V	E	Q	A	S	D	Q	H	Q	A	E	E	M	N	A	E	D	P	L	F	I	L	Y	T	S	G	S	T	G	K	P	K	G	V	L	H	T	T	G	G	Y	L	V	Y	A	A	L	T	F	K	Y	V	F	D	Y	H	P	G	D
Query Conservation
Alig confidence		.																																																																			.	.
Template Conservation		.																																																																			.	.
Template Sequence		.	T	G	V	E	R	V	F	V	V	G	G	E	V	N	S	L	S	E	V	X	D	S	G	S	E	D	F	E	N	V	K	V	N	P	E	E	D	V	A	L	I	P	Y	T	G	G	T	T	G	P	K	G	V	X	L	T	H	F	N	L	A	A	N	A	L	Q	.	.	L	A	V	A	T	G	L	S	H	X	D
Template Known Secondary structure		.	S									T		S	S	S									S		S									T	T	T	S																														.	.									T	T
Template Predicted Secondary structure		.																																																																			.	.
Template SS confidence
			143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	W	C	T	A	D	V	G	W	V	T	G	H	S	Y	L	L	Y	G	P	L	A	C	G	A	T	T	L	M	F	E	G	V	P	N	W	P	T	P	A	R	M	A	Q	V	V	D	K	H	Q	V	N	I	L	Y	T	A	P	T	A	I	R	A	L	M	A	E	G	D	K	A	I	E	G	T	D	R	S	S
Query Conservation
Alig confidence																																		.	.	.	.	.
Template Conservation																																		.	.	.	.	.
Template Sequence		T	I	V	G	C	X	P	X	F	H	S	A	E	F	G	L	V	N	L	X	V	T	V	G	N	E	Y	V	V	X	G	X	.	.	.	.	.	F	N	Q	E	X	L	A	E	N	I	E	K	Y	K	G	T	F	S	W	A	V	P	P	A	L	N	V	L	V	N	T	L	E	S	S	N	K	T	Y	D	W	S	Y
Template Known Secondary structure							S		T	T	S								T	T												S	S	.	.	.	.	.													T	T																					S							T	T
Template Predicted Secondary structure																																		.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.					.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		L	R	I	L	G	S	V	G	E	P	I	N	P	E	A	W	E	W	Y	W	K	K	I	.	.	.	.	G	N	E	K	C	P	V	V	D	T	W	W	Q	T	E	T	G	G	F	M	I	T	P	L	P	G	A	T	E	L	K	A	G	S	A	T	R	P	F	F	G	V	Q	P	A	L	V	D	N	E	G	N	P
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.																												.
Template Conservation																																																								.
Template Sequence		L	K	V	F	A	T	G	A	W	P	V	A	P	A	L	V	E	K	L	L	K	L	A	A	E	K	C	N	N	P	R	L	R	H	N	Q	I	W	G	X	T	E	A	C	P	X	V	T	T	N	P	P	L	R	.	L	D	K	S	T	T	Q	G	V	P	X	S	D	I	E	L	K	V	I	S	L	E	D	G	R
Template Known Secondary structure									S	S																		S	S		T	T										G	G	G	S	S							G	G	G	.	G	G	G	T	T	S						T	T								S	S	S
Template Predicted Secondary structure																																																								.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		456	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.			.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure					.																																		.	.
Query SS confidence					.																																		.	.
Query Sequence		L	E	G	.	A	T	E	G	S	L	V	I	T	D	S	W	P	G	Q	A	R	T	L	F	G	D	H	E	R	F	E	Q	T	Y	F	S	T	.	.	F	K	N	M	Y	F	S	G	D	G	A	R	R	D	E	D	G	Y	Y	W	I	T	G	R	V	D	D	V	L	N	V	S	G	H	R	L	G	T	A	E	I
Query Conservation					.																																		.	.
Alig confidence					.													.	.																				.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	G	V	G	E	S	G	E	I	V	I	R	G	P	N	.	.	I	F	K	G	Y	W	K	R	E	K	E	N	Q	E	C	W	W	Y	D	E	K	G	R	K	F	F	R	T	G	D	V	G	F	I	D	E	E	G	F	L	H	F	Q	D	R	.	.	.	.	.	.	.	.	.	.	.	.	V	P	F	E	L
Template Known Secondary structure					T	T									S	T	T	.	.	S		S			T	T		T	T	G	G	G	T	S					T	T															T	T	S								.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.													.	.	.	.	440
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	A	L	V	A	H	P	K	I	A	E	A	A	V	V	G	I	P	H	N	I	K	G	Q	A	I	Y	A	Y	V	T	L	N	H	G	E	E	P	S	P	E	L	Y	A	E	V	R	N	W	V	R	K	E	I	G	P	L	A	T	P	D	V	L	H	W	T	D	S	L	P
Query Conservation
Alig confidence																							.	.	.	.	.	.												.																	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.												.																	.	.	.	.	.
Template Sequence		E	A	L	L	X	K	H	E	A	V	X	D	V	A	V	I	G	K	P	D	P	.	.	.	.	.	.	K	A	F	I	V	L	K	P	E	Y	R	.	G	K	V	D	E	E	D	I	I	E	W	V	R	E	R	I	.	.	.	.	.	S	R	E	V	E	F	V	E	E	L	P
Template Known Secondary structure						T	T	S	T	T													.	.	.	.	.	.								S	T	T	T	.	T	S												T	T		.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.												.																	.	.	.	.	.
Template SS confidence
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.							.	.	.	.	.	.	480	.	.	.	.		.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500						.	.	.	.	.	.	.	.	.	510	.