Job Description P27550 Confidence 100.00% Date Thu Jan 5 11:44:02 GMT 2012 Rank 29 Aligned Residues 343 % Identity 20% Template c2y4oA_ PDB info PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate Resolution 1.90 Å

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		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																																				.	.
Query SS confidence																																																				.	.
Query Sequence		A	S	D	Q	H	Q	A	E	E	M	N	A	E	D	P	L	F	I	L	Y	T	S	G	S	T	G	K	P	K	G	V	L	H	T	T	G	G	Y	L	V	Y	A	A	L	T	F	K	Y	V	F	.	.	D	Y	H	P	G	D	I	Y	W	C	T	A	D	V	G	W	V	T	G	H	S	Y	L	L	Y	G	P	L
Query Conservation																																																				.	.
Alig confidence																																																				.	.
Template Conservation
Template Sequence		D	N	Y	P	F	G	L	F	A	V	P	R	E	Q	V	V	R	V	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	R	D	I	D	T	W	A	N	V	T	A	R	S	I	R	A	A	G	G	R	P	G	D	T	L	H	N	A	F	G	Y	G	L	F	T	G	G	L	G	I	H	Y	G	A	E
Template Known Secondary structure		T	T	T	T	T	T	T		S	S		G	G	G										S	S	S	S																									T	T			T	T							S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	G	A	T	T	L	M	F	E	G	V	P	N	W	P	T	P	A	R	M	A	Q	V	V	D	K	H	Q	V	N	I	L	Y	T	A	P	T	A	I	R	A	L	M	A	E	G	D	K	A	I	E	G	T	D	R	S	S	L	R	I	L	G	S	V	G	E	P	I	N	P	E	A	W	E	W	Y	W	K	K
Query Conservation
Alig confidence														.	.	.	.
Template Conservation														.	.	.	.
Template Sequence		R	L	G	C	M	V	V	P	M	S	G	G	.	.	.	.	Q	T	E	K	Q	V	Q	L	I	R	D	F	E	P	K	I	I	L	V	T	P	S	Y	M	L	N	L	I	D	E	M	V	R	Q	G	M	D	P	A	E	S	S	L	K	I	G	I	F	G	A	E	P	W	T	Q	A	L	R	N	E	V	E	T	R
Template Known Secondary structure				T								S		.	.	.	.															S																			T	T			G	G	G	S	S								S	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	N	E	K	C	P	V	V	D	T	W	W	Q	T	E	T	G	G	F	M	I	T	P	L	P	G	A	T	E	L	K	A	G	S	A	T	R	P	F	F	G	V	Q	P	A	L	V	D	N	E	G	N	P	L	E	G	A	T	E	G	S	L	V	I	T	D	S	W	P	G	Q	A	R	T	L	F	G	D	H
Query Conservation
Alig confidence			.	.	.																						.	.																																											.	.									.
Template Conservation			.	.	.																						.	.																																											.	.									.
Template Sequence		V	.	.	.	G	I	D	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	C	E	.	.	C	V	E	T	K	D	G	P	V	I	W	E	D	H	F	Y	P	E	I	I	D	P	V	T	G	E	V	L	P	D	G	S	Q	G	E	L	V	F	T	S	L	T	.	.	K	E	A	M	P	V	I	R	.
Template Known Secondary structure			.	.	.	T										T	T	T	T								.	.		T	T	T			S					T	T	T								T	T	T			B			T	T										S	S	.	.		S	S	S			S	S	.
Template Predicted Secondary structure			.	.	.																						.	.																																											.	.									.
Template SS confidence
		233				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.							.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		E	R	F	E	Q	T	Y	F	S	T	F	K	N	M	Y	F	S	G	D	G	A	R	R	D	E	D	G	.	.	.	.	.	.	Y	Y	W	I	T	G	R	V	D	D	V	L	N	V	S	G	H	R	L	G	T	A	E	I	E	S	A	L	V	A	H	P	K	I	A	E	A	A	V	V	G	I	P	H	N	I	K
Query Conservation																													.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	T	R	D	L	T	A	L	L	P	P	T	A	R	A	M	R	R	L	A	K	I	T	G	R	S	D	D	M	L	I	V	R	G	V	N	V	F	P	S	Q	I	E	E	I	V	V	A	L	P	L	L	S	G	Q	F	Q	I	T	L	S	R	D	G	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S	S	S	S										S	S						T	T														T	S	T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		556	.	.	.	560	.	.	.	.	.	.	.	.			.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590				.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure															.	.																							.	.	.
Query SS confidence															.	.																							.	.	.
Query Sequence		G	Q	A	I	Y	A	Y	V	T	L	N	H	G	.	.	E	E	P	S	P	E	L	Y	A	E	V	R	N	W	V	R	K	E	I	G	P	L	.	.	.	A	T	P	D	V	L	H	W	T	D	S	L	P	K	T	R	S	G	K	I	M	R
Query Conservation															.	.																							.	.	.
Alig confidence															.	.																							.	.	.
Template Conservation
Template Sequence		M	D	R	L	D	L	A	V	E	L	R	S	E	A	A	A	S	V	T	D	G	E	R	A	A	L	A	R	E	L	Q	H	R	I	K	T	M	V	G	V	S	S	G	V	T	V	L	A	A	G	G	I	P	A	T	A	T	G	K	A	R	R
Template Known Secondary structure																	T	T																					T											T	T		S				T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions