Job Description P27550 Confidence 100.00% Date Thu Jan 5 11:44:02 GMT 2012 Rank 3 Aligned Residues 568 % Identity 19% Template c2vsqA_ PDB info PDB header:ligase Chain: A: PDB Molecule:surfactin synthetase subunit 3; PDBTitle: structure of surfactin a synthetase c (srfa-c), a2 nonribosomal peptide synthetase termination module Resolution 2.60 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	R	C	L	I	N	P	Q	Q	Y	E	A	M	Y	Q	Q	S	I	N	V	P	D	T	F	W	G	E	Q	G	K	I	L	D	W	I	K	P	Y	Q	K	V	K	N	T	S	F	A	P	G	N	V	S	I	K	W	Y	E	D	G	T	L	N	L	A	A	N	C	L	D	R	H	L	Q	E	N	G	D	R	T
Query Conservation
Alig confidence																															.	.																											.	.	.	.	.	.	.
Template Conservation																															.	.																											.	.	.	.	.	.	.
Template Sequence		E	A	F	I	L	R	L	K	S	Q	L	L	T	A	I	Q	Q	L	I	Q	N	P	D	Q	P	V	S	T	I	.	.	N	L	V	D	D	R	E	R	E	F	L	L	T	G	L	N	P	P	A	Q	A	H	E	T	K	P	.	.	.	.	.	.	.	L	T	Y	W	F	K	E	A	V	N	A	N	P	D	A	P
Template Known Secondary structure																						S	T	T	S	B	G	G	G		.	.													T	T	T	S											.	.	.	.	.	.	.													T	T	S
Template Predicted Secondary structure																															.	.																											.	.	.	.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.			440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.								.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	I	W	E	G	D	D	A	S	Q	S	K	H	I	S	Y	K	E	L	H	R	D	V	C	R	F	A	N	T	L	L	E	L	G	I	K	K	G	D	V	V	A	I	Y	M	P	M	V	P	E	A	A	V	A	M	L	A	C	A	R	I	G	A	V	H	S	V	I	F	G	G	F	S	P	E	A	V	A	G
Query Conservation
Alig confidence					.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.
Template Sequence		A	L	T	.	.	.	.	.	.	Y	S	G	Q	T	L	S	Y	R	E	L	D	E	E	A	N	R	I	A	R	R	L	Q	K	H	G	A	G	K	G	S	V	V	A	L	Y	T	K	R	S	L	E	L	V	I	G	I	L	G	V	L	K	A	G	A	A	Y	L	P	V	D	P	K	L	P	E	D	R	I	S	Y
Template Known Secondary structure					.	.	.	.	.	.	S	S	S																						T	T			T	T									S	S													T	T								T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.
Template SS confidence
		482	.	.							.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	I	D	S	N	S	R	L	V	I	T	S	D	E	G	V	R	A	G	R	S	I	P	L	K	K	N	V	D	D	A	L	K	N	P	N	V	T	S	V	E	H	V	V	V	L	K	R	T	G	G	K	I	D	W	Q	E	G	R	D	L	W	W	H	D	L	V	E	Q	A	S	D	Q	H	Q	A	E	E	M
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	A	D	S	A	A	A	C	L	L	T	H	Q	E	M	K	E	Q	A	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	Y	T	G	T	T	L	F	I	D	D	Q	T	R	F	E	E	Q	A	S	D	P	A	T	A	I
Template Known Secondary structure							T								S	T	T		T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S					S	S		G	G	G	G	G	S		S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.																																.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	E	D	P	L	F	I	L	Y	T	S	G	S	T	G	K	P	K	G	V	L	H	T	T	G	G	Y	L	V	Y	A	A	L	T	F	K	Y	V	F	D	Y	H	P	G	D	I	Y	W	C	T	A	D	V	G	W	V	T	G	H	S	Y	L	L	Y	G	P	L	A	C	G	A	T	T	L	M	F	E	G	V
Query Conservation
Alig confidence																																				.	.
Template Conservation																																				.	.
Template Sequence		D	P	N	D	P	A	Y	I	M	Y	T	S	G	T	T	G	K	P	K	G	N	I	T	T	H	A	N	I	Q	G	L	V	K	H	.	.	V	D	Y	M	A	F	S	D	Q	D	T	F	L	S	V	S	N	Y	A	F	D	A	F	T	F	D	F	Y	A	S	M	L	N	A	A	R	L	I	I	A	D	E	H	T
Template Known Secondary structure			T	T	S										S	S	S	S																S	S	.	.			S	S				T	T							S		T	T	S	T											T	T	T								G	G	G
Template Predicted Secondary structure																																				.	.
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.			.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	W	P	T	P	A	R	M	A	Q	V	V	D	K	H	Q	V	N	I	L	Y	T	A	P	T	A	I	R	A	L	M	A	E	G	D	K	A	I	E	G	T	D	R	S	S	L	R	I	L	G	S	V	G	E	P	I	N	P	E	A	W	E	W	Y	W	K	K	I	G	N	E	K	C	P	V	V	D	T	W
Query Conservation
Alig confidence		.	.																																	.	.	.	.	.																															.	.
Template Conservation		.	.																																	.	.	.	.	.																															.	.
Template Sequence		.	.	L	L	D	T	E	R	L	T	D	L	I	L	Q	E	N	V	N	V	M	F	A	T	T	A	L	F	N	L	L	T	D	A	.	.	.	.	.	G	E	D	W	M	K	G	L	R	C	I	L	F	G	G	E	R	A	S	V	P	H	V	R	K	A	L	R	I	M	.	.	G	P	G	K	L	I	N	C	Y
Template Known Secondary structure		.	.	T	T													T																		.	.	.	.	.		S					T		S						S	S															.	.		T	T
Template Predicted Secondary structure		.	.																																	.	.	.	.	.																															.	.
Template SS confidence
				683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.						.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.			.	.	.	.	.	750	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.			.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		W	Q	T	E	T	G	G	F	M	I	T	P	L	P	G	A	T	E	L	.	.	K	A	G	S	A	T	R	P	F	F	G	V	Q	P	A	L	V	D	N	E	G	N	P	L	E	G	A	T	E	G	S	L	V	I	T	D	S	W	P	G	Q	A	R	T	L	F	G	D	H	E	R	F	E	Q	T	Y	F	S	T
Query Conservation																					.	.
Alig confidence																					.	.																																							.	.
Template Conservation																																																													.	.
Template Sequence		G	P	T	E	G	T	V	F	A	T	A	H	V	V	H	D	L	P	D	S	I	S	S	L	P	I	G	K	P	I	S	N	A	S	V	Y	I	L	N	E	Q	S	Q	L	Q	P	F	G	A	V	G	E	L	C	I	S	G	M	G	.	.	V	S	K	G	Y	V	N	R	A	D	L	T	K	E	K	F	I	E	N
Template Known Secondary structure				G	G	G	S	S		S										S	S		S	S				B				T	T								T	T	S		B			T	T										T	T	.	.					B	T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		754	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.			.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.
						492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	F	K	N	M	Y	F	S	G	D	G	A	R	R	D	E	D	G	Y	Y	W	I	T	G	R	V	D	D	V	L	N	V	S	G	H	R	L	G	T	A	E	I	E	S	A	L	V	A	H	P	K	I	A	E	A	A	V	V	G	I	P	H	N	I	K	G	Q	A	I	Y	A	Y	V	T	L	N	H
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		P	F	K	P	G	E	T	L	Y	R	T	G	D	L	A	R	W	L	P	D	G	T	I	E	Y	A	G	R	I	D	D	Q	V	K	I	R	G	H	R	I	E	L	E	E	I	E	K	Q	L	Q	E	Y	P	G	V	K	D	A	V	V	V	A	D	R	H	E	S	G	D	A	S	I	N	A	Y	L	V	N	R	T
Template Known Secondary structure		T	T	S	T	T														T	T	S								G	G	G					T	T															S	S	S												S	S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		832	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	E	P	S	P	E	L	Y	A	E	V	R	N	W	V	R	K	E	I	G	P	L	A	T	P	D	V	L	H	W	T	D	S	L	P	K	T	R	S	G	K	I	M	R	R	I	L	R	K	I	A	A	G	D	T	S	N	L	G	D	T	S	T	L	A	D	P	G	V	V	E	K	L	L	E	E	K
Query Conservation
Alig confidence							.	.	.	.	.
Template Conservation							.	.	.	.	.
Template Sequence		Q	L	S	A	E	.	.	.	.	.	D	V	K	A	H	L	K	K	Q	L	P	A	Y	M	V	P	Q	T	F	T	F	L	D	E	L	P	L	T	T	N	G	K	V	N	K	R	L	L	P	K	P	D	Q	D	Q	L	A	E	E	W	I	G	P	R	N	E	M	E	E	T	I	A	Q	I	W	S	E	V
Template Known Secondary structure		S	S				.	.	.	.	.										S		G	G	G	S		S						S						S	S		S	S			S							G	G	G	G								S	S
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		912	.	.	.	.						.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.