Job Description P27550 Confidence 100.00% Date Thu Jan 5 11:44:02 GMT 2012 Rank 18 Aligned Residues 476 % Identity 21% Template c1amuB_ PDB info PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine Resolution 1.90 Å

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		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	A	A	N	C	L	D	R	H	L	Q	E	N	G	D	R	T	A	I	I	W	E	G	D	D	A	S	Q	S	K	H	I	S	Y	K	E	L	H	R	D	V	C	R	F	A	N	T	L	L	E	L	G	I	K	K	G	D	V	V	A	I	Y	M	P	M	V	P	E	A	A	V	A	M	L	A	C	A	R	I
Query Conservation
Alig confidence																										.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.
Template Sequence		K	T	I	H	Q	L	F	E	E	Q	V	S	K	R	P	N	N	V	A	I	V	C	E	N	.	.	.	.	.	.	E	Q	L	T	Y	H	E	L	N	V	K	A	N	Q	L	A	R	I	F	I	E	K	G	I	G	K	D	T	L	V	G	I	M	M	E	K	S	I	D	L	F	I	G	I	L	A	V	L	K	A
Template Known Secondary structure																T	T	S						T	T	.	.	.	.	.	.																							T			T	T									S	S													T
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	V	H	S	V	I	F	G	G	F	S	P	E	A	V	A	G	R	I	I	D	S	N	S	R	L	V	I	T	S	D	E	G	V	R	A	G	R	S	I	P	L	K	K	N	V	D	D	A	L	K	N	P	N	V	T	S	V	E	H	V	V	V	L	K	R	T	G	G	K	I	D	W	Q	E	G	R	D	L
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	A	Y	V	P	I	D	I	E	Y	P	K	E	R	I	Q	Y	I	L	D	D	S	Q	A	R	M	L	L	T	Q	K	H	L	V	H	L	I	H	N	Q	F	N	G	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T								T	T	S															S						G	G	G	G	G	G	G						S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	W	H	D	L	V	E	Q	A	S	D	Q	H	Q	A	E	E	M	N	A	E	D	P	L	F	I	L	Y	T	S	G	S	T	G	K	P	K	G	V	L	H	T	T	G	G	Y	L	V	Y	A	A	L	T	F	K	Y	V	F	D	Y	H	P	G	D	I	Y	W	C	T	A	D	V	G	W	V	T	G	H	S	Y
Query Conservation
Alig confidence		.	.	.																																																		.
Template Conservation		.	.	.																																																		.
Template Sequence		.	.	.	E	I	F	E	E	D	T	I	K	I	R	E	G	T	N	L	H	V	P	S	K	S	T	D	L	A	Y	V	I	Y	T	N	P	K	G	T	M	L	E	H	K	G	I	S	N	L	K	V	F	.	F	E	N	S	L	N	V	T	E	K	D	R	I	G	Q	F	A	S	I	S	F	D	A	S	V	W	E
Template Known Secondary structure		.	.	.						S	S	G	G	G	S			S								T	T	S																										.				T	S				T	T							S		T	T	S	T
Template Predicted Secondary structure		.	.	.																																																		.
Template SS confidence
					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	Y	G	P	L	A	C	G	A	T	T	L	M	F	E	G	V	P	N	W	P	T	P	A	R	M	A	Q	V	V	D	K	H	Q	V	N	I	L	Y	T	A	P	T	A	I	R	A	L	M	A	E	G	D	K	A	I	E	G	T	D	R	S	S	L	R	I	L	G	S	V	G	E	P	I	N	P	E	A	W
Query Conservation
Alig confidence																				.	.																														.	.	.	.	.	.	.	.
Template Conservation																				.	.																														.	.	.	.	.	.	.	.
Template Sequence		M	F	M	A	L	L	T	G	A	S	L	Y	I	I	L	K	D	T	.	.	I	N	D	F	V	K	F	E	Q	Y	I	N	Q	K	E	I	T	V	I	T	L	P	P	T	Y	V	V	H	L	.	.	.	.	.	.	.	.	D	P	E	R	I	L	S	I	Q	T	L	I	T	A	G	S	A	T	S	P	S	L	V
Template Known Secondary structure							T	T	T											.	.		T												T	T												T	T	S	.	.	.	.	.	.	.	.		T	T	T			S		S						S	S
Template Predicted Secondary structure																				.	.																														.	.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.									.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		E	W	Y	W	K	K	I	G	N	E	K	C	P	V	V	D	T	W	W	Q	T	E	T	G	.	G	F	M	I	T	P	L	P	G	A	T	E	L	K	A	G	S	A	T	R	P	F	F	G	V	Q	P	A	L	V	D	N	E	G	N	P	L	E	G	A	T	E	G	S	L	V	I	T	D	S	W	P	G	Q	A
Query Conservation																										.
Alig confidence									.	.	.	.	.													.																																																				.	.
Template Conservation									.	.	.	.	.																																																																	.	.
Template Sequence		N	K	W	K	E	K	V	.	.	.	.	.	T	Y	I	N	A	Y	G	P	T	E	T	T	I	C	A	T	T	W	V	A	T	K	E	T	I	G	H	S	V	P	I	G	A	P	I	Q	N	T	Q	I	Y	I	V	D	E	N	L	Q	L	K	S	V	G	E	A	G	E	L	C	I	G	G	E	G	.	.	L	A
Template Known Secondary structure					T	T	T	S	.	.	.	.	.									G	G	G	S	S		S							S	S				S	S				B				T	T								T	T	S		B			T	T										T	T	.	.
Template Predicted Secondary structure									.	.	.	.	.																																																																	.	.
Template SS confidence
		311	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.			.	.
		475	.	.	.	.	480	.	.	.	.	.	.	.	.					.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		R	T	L	F	G	D	H	E	R	F	E	Q	T	Y	.	.	.	.	F	S	T	F	K	N	M	Y	F	S	G	D	G	A	R	R	D	E	D	G	Y	Y	W	I	T	G	R	V	D	D	V	L	N	V	S	G	H	R	L	G	T	A	E	I	E	S	A	L	V	A	H	P	K	I	A	E	A	A	V	V	G	I
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		R	G	Y	W	K	R	P	E	L	T	S	Q	K	F	V	D	N	P	F	V	P	G	E	K	L	Y	K	T	G	D	Q	A	R	W	L	S	D	G	N	I	E	Y	L	G	R	I	D	N	Q	V	K	I	R	G	H	R	V	E	L	E	E	V	E	S	I	L	L	K	H	M	Y	I	S	E	T	A	V	S	V	H
Template Known Secondary structure					T	T													S	S	S	T	T	S													T	T	S								G	G	G					T	T														T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	N	I	K	G	Q	A	I	Y	A	Y	V	T	L	N	H	G	E	E	P	S	P	E	L	Y	A	E	V	R	N	W	V	R	K	E	I	G	P	L	A	T	P	D	V	L	H	W	T	D	S	L	P	K	T	R	S	G	K	I	M	R	R	I	L	R	K
Query Conservation
Alig confidence																						.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		K	D	H	Q	E	Q	P	Y	L	C	A	Y	F	V	S	E	K	H	I	P	.	.	.	.	.	L	E	Q	L	R	Q	F	S	S	E	E	L	P	T	Y	M	I	P	S	Y	F	I	Q	L	D	K	M	P	L	T	S	N	G	K	I	D	R	K	Q	L	P	E
Template Known Secondary structure				T	T	S											S	S				.	.	.	.	.												S		G	G	G	S		S						S	S			B		T	T	S	S	B		G	G	G	S
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.						.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.