Phyre 2 alignment of P76335 with d1af6a

Job Description P76335
Confidence 6.29% Date Thu Jan 5 12:21:55 GMT 2012

Rank 52 Aligned Residues 301

% Identity 12% Template d1af6a_

SCOP info Transmembrane beta-barrels Porins Maltoporin-like

Resolution 2.40

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence	L	D	L	Y	G	K	V	V	G	L	H	Y	F	S	D	D	S	G	S	D	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	Y	A	R	I	G	F	K	G	E	T	Q	I	A	D	Q	F	T	G	Y	G	Q	W	E	F	N	I	G	A	N	G	P	E	S	.	D	K	G	N	T	A
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence	V	D	F	H	G	Y	A	R	S	G	I	G	W	T	G	S	G	G	E	Q	Q	C	F	Q	T	T	G	A	Q	S	K	Y	R	L	G	N	E	C	E	T	Y	A	E	L	K	L	G	Q	E	V	W	K	E	G	D	K	S	F	Y	F	D	T	N	V	A	Y	S	V	A	Q	Q	N	D	W	E	A	T	D	P	A
Template Known Secondary structure															T	T	S	S	B							T	T		S					T	T				S															T	T															S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	95	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence	T	R	L	A	F	A	G	L	G	F	G	.	.	.	.	Q	N	G	T	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	E	A	W	T	D	M	L	P	E	F	G	G	D	T	Y	A	G	A	D	N	F	M	N	G	R	A	N	G	V	A	T	Y	R	N	N	G	F	F	G	L	V	D	G	L	N	F	A	L
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	R	E	A	N	V	Q	G	K	N	L	I	E	W	L	P	G	S	T	I	W	A	G	K	R	F	Y	Q	R	H	D	.	V	H	M	I	D	F	Y	Y	W	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	P	G	A	G	L
Template Known Secondary structure										S			T	T	S	T	T											S				.		G	G	G	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.																															.	.	.	.	.	.	.

	171		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence	Q	.	Y	Q	G	N	N	E	S	G	G	P	F	G	Q	E	G	S	G	S	G	D	G	R	S	L	S	K	E	N	G	D	G	F	G	M	S	T	S	Y	D	F	D	F	G	L	S	L	G	A	A	Y	X	N	S	D	R	S	D	R	Q	V	G	V	G	L	N	D	R	N	H	S	N	R	N	A	G	G	E	T
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence	E	N	I	D	V	G	F	G	K	L	S	L	A	A	T	R	S	S	E	A	G	G	S	S	S	F	A	S	N	N	I	Y	D	Y	T	N	E	T	A	N	D	V	F	D	V	R	L	A	Q	M	E	I	N	P	G	G	T	L	E	L	G	V	D	Y	G	R	A	N	L	R	D	N	Y	R	L	V	D	G	A	S
Template Known Secondary structure						S	S	S																B	S	S			S		G	G	G																					T	T																T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

	250	.	.	.	.	.	.	.	.	.	260					.	.	.	.	.	.	.	.	.	270									.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.											.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.											.	.	.	.	.	.	.	.
Query Sequence	A	E	A	W	T	V	G	A	K	Y	D	.	.	.	.	A	N	N	V	Y	L	A	A	M	Y	.	.	.	.	.	.	.	.	A	E	T	R	N	M	T	P	Y	G	G	G	E	F	D	N	G	E	S	R	S	A	I	A	N	K	T	Q	N	F	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	I	A
Query Conservation												.	.	.	.											.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	D	G	W	L	F	T	A	E	H	T	Q	S	V	L	K	G	F	N	K	F	V	V	Q	Y	A	T	D	S	M	T	S	Q	G	K	G	L	S	Q	G	S	G	V	A	F	D	N	E	K	F	A	Y	N	I	N	N	N	G	H	M	L	R	I	L	D	H	G	A	I	S	M	G	D	N	W	D	M	M	Y	V
Template Known Secondary structure															T	T												G	G	G	T	T	T		S	S					S						T	T																								T	T	T
Template Predicted Secondary structure
Template SS confidence
	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	L	Q	S	K	G	K	D	L	G	G	W	A	H	D	G	N	G	D	P	R	Y	T	N	K	D	L	V	K	Y	V	D	I	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	N	D	D
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	M	Y	Q	D	I	N	.	.	.	.	.	.	.	.	.	.	.	.	W	D	N	D	N	G	T	K	W	W	T	V	G	I	R	P	M	Y	K	W	T	P	I	M	S	T	V	M	E	I	G	Y	D	N	V	E	S	Q	R
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.		T	T	S																S	S	S	S															T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	290	.	.	.	.	.	.													.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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