Job Description P76335 Confidence 14.82% Date Thu Jan 5 12:21:55 GMT 2012 Rank 50 Aligned Residues 325 % Identity 12% Template d1a0tp_ SCOP info Transmembrane beta-barrels Porins Maltoporin-like Resolution 2.40

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																						.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	L	D	L	Y	G	K	V	V	G	L	H	Y	F	S	D	D	S	G	S	D	G	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	A	R	I	G	F	K	G	E	T	Q	I	A	D	Q	F	T	G	Y	G	Q	W	E	F	N	I	G	A	N	G	P	E	S
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	F	E	F	H	G	Y	A	R	S	G	V	I	M	N	D	S	G	A	S	T	K	S	G	A	Y	I	T	P	A	G	E	T	G	G	A	I	G	R	L	G	N	Q	A	D	T	Y	V	E	M	N	L	E	H	K	Q	T	L	D	N	G	A	T	T	R	F	K	V	M	V	A	D	G	Q	T	S	Y	N	D
Template Known Secondary structure																		T	T	S	S						T	T		S	G	G	G	G	G	T						T	T				S														T	T	S																	S	S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		89				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.								.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																	.	.	.	.	.	.	.
Query SS confidence			.	.	.																	.	.	.	.	.	.	.
Query Sequence		D	.	.	.	K	G	N	T	A	T	R	L	A	F	A	G	L	G	F	G	.	.	.	.	.	.	.	Q	N	G	T	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	E	A	W	T	D	M	L	P	E	F	G	G	D	T	Y	A	G	A	D	N	F	M	N	G	R	A	N	G	V	A	T	Y	R	N	N	G
Query Conservation			.	.	.																	.	.	.	.	.	.	.
Alig confidence			.	.	.																	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	T	A	S	T	S	D	L	N	V	R	Q	A	F	V	E	L	G	N	L	P	T	F	A	G	P	F	K	G	S	T	L	W	A	G	K	R	F	D	R	D	N	F	D	I	H	W	I	D	S	D	V	V	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				G	G	G														S		T	T			G	G	G	T	T											T	T					G	G	G	T					B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	G	L	V	D	G	L	N	F	A	L	Q	Y	Q	G	N	N	E	S	G	G	P	F	G	Q	E	G	S	G	S	G	D	G	R	S	L	S	K	E	N	G	D	G	F	G	M	S	T	S	Y	D	F	D	F	G	L	S	L	G	A	A	Y	X	N	S	D	R	S	D	R	Q	V	G	V	G	L	N	D	R
Query Conservation
Alig confidence		.	.	.	.	.																																																.
Template Conservation		.	.	.	.	.																																																.
Template Sequence		.	.	.	.	.	A	G	T	G	G	G	I	Y	D	V	K	W	N	D	G	L	R	S	N	F	S	L	Y	G	R	N	F	G	D	I	D	D	S	S	N	S	V	Q	N	Y	I	L	T	M	N	H	F	.	A	G	P	L	Q	M	M	V	S	G	L	R	A	K	D	N	D	E	R	K	D	S	N	G	N	L	A
Template Known Secondary structure		.	.	.	.	.													T	T	T															T	T		G	G	G													.		T	T											T	T	G	G	G		B		S	S	S	S	B	S
Template Predicted Secondary structure		.	.	.	.	.																																																.
Template SS confidence
							206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	S	N	R	N	A	G	G	E	T	A	E	A	W	T	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	M	Y	A	E	T	R	N	M	T	P	Y	G	G	G	E	F	D	N	G	E	S	R	S	A	I	A	N	K	T	Q	N	F	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	I	A	Y
Query Conservation
Alig confidence																																													.	.
Template Conservation																																													.	.
Template Sequence		K	G	D	A	A	N	T	G	V	H	A	L	L	G	L	H	N	D	S	F	Y	G	L	R	D	G	S	S	K	T	A	L	L	Y	G	H	G	L	G	A	E	V	K	.	.	G	I	G	S	D	G	A	L	R	P	G	A	D	T	W	R	I	A	S	Y	G	T	T	P	L	S	E	N	W	S	V	A	P	A	M
Template Known Secondary structure			S	S			S														S	T	T	S	S														T	T		S		S	.	.	B	T	T			T	T			T	T														S	S	S	S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	S	K	G	K	D	L	G	G	W	A	H	D	G	N	G	D	P	R	Y	T	N	K	D	L	V	K	Y	V	D	I	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	N	D	D	D	F	Y	E	A	N	G	I	A	T	D	D	I	V	A	V	G	L	V	Y	Q	F
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	Q	R	S	K	D	R	.	.	.	.	.	.	.	.	.	.	Y	A	D	G	D	S	Y	Q	W	A	T	F	N	L	R	L	I	Q	A	I	N	Q	N	F	A	L	A	Y	E	G	S	Y	Q	Y	M	D	L	K	P	E	G	Y	N	D	R	Q	A	V	N	G	S	F	Y	K	L	T	F	A	P	T	F
Template Known Secondary structure								S	S	.	.	.	.	.	.	.	.	.	.	S	S	T	T																S	S	S	S																	T	T	G	G	G
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.											.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions