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Job DescriptionP76335
Confidence88.73%DateThu Jan 5 12:21:55 GMT 2012
Rank39Aligned Residues227
% Identity15%Templatec3qq2C_
PDB info PDB header:membrane protein/protein transportChain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   147..150.........160.........170....... ..180.........190.........200.........210.........220
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Query Sequence  RANGVATYRNNGFFGLVDGLNFALQYQGNNE. . . . . . SGGPFGQEGSGSGDGRSLSKENGDGFGMSTSYDFDFGLSLGAA
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Template Sequence  RTFSERQQISNAYDQTVSGLEIGLDRGWSASGGRWYAGGLLGYTYADRTYPGDGGGKVKGLHVGGYAAYVGDGGYYLDTV
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TTBTTTB

SSSB
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   752.......760.........770.........780.........790.........800.........810.........820.........830.
 
   221........230.........240.........250.........260. ..... ...270.........280.........290.....
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Query Sequence  YXNSDRSDRQVGVGLNDRNHSNRNAGGETAEAWTVGAKYDA. NNVYL. . . . AAMYAETRNMTPYGGGEFDNGESRSAIAN
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Template Sequence  LRLGRYDQQYNIAGTDGGRVTADYRTSGAAWSLEGGRRFELPNDWFAEPQAEVMLWRTSGKRYRASNGLRVKVDANTATL
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   836...840.........850.........860.........870.........880.........890.........900.........910.....
 
   296...300.........310.. .......320.........330.........340.........350.........360.........370.
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Query Sequence  KTQNFEVVAQYQFDFGL. . . . RPSIAYLQSKGKDLGGWAHDGNGDPRYTNKDLVKYVDIGATYYFNKNMSTYVDYKINLL
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Template Sequence  GRLGLRFGRRIALAGGNIVQPYARLGWTQEFKS. . . . . . . . . . . . . . . TGRHGRVELGAGVDAALGKGHNLYASYEYAAG
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   916...920.........930.........940........ .950.........960.........970.........980
 
   372.......380.........390.......
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Query Sequence  DNDDDFYEANGIATDDIVAVGLVYQF
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Template Sequence  DRIN. . . . . . . . . IPWSFHAGYRYSF
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B

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   994... ..1000.........1010
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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