Job Description P76335 Confidence 97.23% Date Thu Jan 5 12:21:55 GMT 2012 Rank 24 Aligned Residues 332 % Identity 11% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.										.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.								.	90	.	.	.	.	.
Predicted Secondary structure																.																						.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Query SS confidence																.																						.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Query Sequence		D	L	Y	G	K	V	V	G	L	H	Y	F	S	D	.	D	S	G	S	D	G	D	M	S	Y	A	R	I	G	F	K	G	E	T	Q	I	.	.	.	.	.	.	.	.	.	A	D	Q	F	T	G	Y	G	Q	W	E	F	N	I	G	A	N	G	P	E	S	.	.	.	.	.	.	.	D	K	G	N	T	A	T
Query Conservation																.																						.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Alig confidence																.																						.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	A	N	L	T	L	R	N	F	Y	F	N	R	N	F	T	N	P	T	K	A	Q	G	K	A	E	E	W	T	Q	S	F	I	L	D	A	K	S	G	F	T	Q	G	T	V	G	F	G	M	D	V	L	G	L	Y	S	L	K	L	D	G	G	K	G	T	G	G	T	Q	L	L	P	L	P	A	D	N	F	G	R
Template Known Secondary structure																			T	T	S	S																					S	S	S																			T	T	S			S	S	S	S					S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		R	L	A	F	A	G	L	G	F	G	Q	N	G	T	F	D	Y	G	R	N	.	.	Y	G	V	V	Y	D	V	E	A	W	T	D	M	L	P	E	F	G	G	D	T	Y	A	G	A	D	N	F	M	N	G	R	A	N	G	V	A	T	Y	R	N	N	G	F	F	G	L	V	D	G	L	N	F	A	L	Q	Y	Q
Query Conservation																						.	.
Alig confidence														.								.	.
Template Conservation														.
Template Sequence		L	G	V	A	F	K	A	R	L	S	Q	T	.	E	V	K	V	G	E	W	M	P	V	L	P	I	L	R	S	D	D	G	R	S	L	P	Q	T	F	R	G	G	Q	I	T	S	K	E	I	A	G	L	T	L	Y	G	G	Q	F	R	A	N	S	P	R	D	D	S	S	M	S	D	M	S	M	F	G	K	A	A
Template Known Secondary structure											T	T		.												T	T						S	S	S	S														S	T	T														T	T		S	S		B					T	T
Template Predicted Secondary structure														.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.							.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.																		.	.	.
Query SS confidence																								.	.	.	.	.	.																		.	.	.
Query Sequence		G	N	N	E	S	G	G	P	F	G	Q	E	G	S	G	S	G	D	G	R	S	L	.	.	.	.	.	.	S	K	E	N	G	D	G	F	G	M	S	T	S	Y	D	F	D	.	.	.	F	G	L	S	L	G	A	A	Y	X	N	S	D	R	S	D	R	Q	V	G	V	G	L	N	D	R	N	H	S	N	R	N
Query Conservation																								.	.	.	.	.	.																		.	.	.
Alig confidence																								.	.	.	.	.	.																		.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	T	S	D	R	F	N	F	Q	G	A	E	Y	A	F	N	D	K	R	T	Q	I	A	L	W	N	A	Q	L	K	D	I	Y	S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	R
Template Known Secondary structure					S												T	T	T	T											T	T	T															S	S																T	.	.	.	.	.	.	.	.	.	.	.	.	.	T		T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.														.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.								.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.																																.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.																																.	.	.	.
Query Sequence		A	G	G	E	T	A	E	A	W	T	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	M	Y	A	E	T	R	N	M	T	P	.	.	.	.	.	.	.	Y	G	G	G	E	F	D	N	G	E	S	R	S	A	I	A	N	K	T	Q	N	F	E	V	V	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R
Query Conservation																																				.	.	.	.	.	.	.																																.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence		A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T
Template Known Secondary structure		T																	T	T													S	S					B	T	T				T	T	S	T	T			S	S					S	T	T												T	T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		P	S	I	A	Y	L	Q	S	K	G	K	D	L	G	G	W	A	H	D	G	N	G	D	P	R	Y	T	N	K	D	L	V	K	Y	V	D	I	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	N	D	D	D	F	Y	E	A	N	G	I	A	T	D	D	I	V
Query Conservation																																														.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.															.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Sequence		L	M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	S	D	G	.	.	.	.	.	.	.	.	.	.	.	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	.	.	.	.	.	.	.	.	E	F	D	E	N
Template Known Secondary structure															T	T					.	.	.	.	.	.	.	.	.	.	.															S	S	S	S	T	T													S	S		S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.												.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.									.	.	.	.	.
		390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	L	V	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	I	I	S	Y	P	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions