Job Description P76335 Confidence 97.44% Date Thu Jan 5 12:21:55 GMT 2012 Rank 23 Aligned Residues 315 % Identity 13% Template c2y0kA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.30 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.
Query Sequence		D	L	Y	G	K	V	V	G	L	H	Y	F	S	D	D	S	G	S	D	G	D	M	S	Y	A	R	I	G	F	K	G	E	T	Q	.	.	.	.	.	.	.	I	A	D	Q	F	T	G	Y	G	Q	W	E	F	N	I	G	A	N	G	P	E	S	D	K	G	N	T	A	T	R	L	A	F	A	G	L	G	F	G
Query Conservation																																				.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.																								.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.
Template Sequence		H	A	S	L	E	L	R	N	F	Y	F	N	R	D	F	R	G	A	R	D	N	A	D	E	W	A	Q	G	F	L	L	R	L	E	S	G	F	S	E	G	T	V	G	F	G	V	D	A	I	G	L	L	G	F	K	L	D	Q	D	D	Y	A	K	L	.	.	.	.	.	.	.	G	L	T	A	K	A	R	V	S
Template Known Secondary structure																			G	G	G																			S	S	S	S																							.	.	.	.	.	.	.									T
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70								.	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	G	T	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	E	A	W	T	D	M	L	P	E	F	G	G	D	T	Y	A	G	A	D	N	F	M	N	G	R	A	N	G	V	A	T	Y	R	N	N	G	F	F	G	L	V	D	G	L	N	F	A	L	Q	Y	Q	G	N	N	E	S	G	G	P	F	G	Q	E
Query Conservation
Alig confidence				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	S	.	L	L	K	V	G	A	L	H	F	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	V	S	A	N	D	T	R	L	L	P	E	L	F	R	G	A	L	L	D	V	Q	E	I	D	G	L	T	L	R	G	A	H	L	D	R	N	K	L	N	S	S	S	D	Y	Q	V	F	S	A
Template Known Secondary structure		T		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S	S	S	S														S	S	S														T	T		S	S		B
Template Predicted Secondary structure				.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.		.	.	.	.	.	.	110	.	.	.	.																.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	G	S	G	D	G	R	S	L	S	K	E	N	G	D	G	F	G	M	S	T	S	Y	D	F	D	F	G	L	S	L	G	A	A	Y	X	N	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	D	R	Q	V	G	V	G	L	N	D	R	N	H	S	N	R	N	A	G	G	E	T	A
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.
Template Sequence		N	R	I	G	G	.	.	.	.	.	.	.	R	S	D	A	F	D	F	A	G	G	D	Y	R	L	T	P	A	L	T	A	S	L	H	Q	G	R	L	K	D	I	Y	R	Q	T	F	A	G	L	V	H	T	L	D	L	G	R	S	L	K	S	D	L	R	F	A	R	A	S	E	D	G	G	F	R	E	L	D	N
Template Known Secondary structure		T	T	T			.	.	.	.	.	.	.			S											S	S	S	S											T	T	T																															T	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170								.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																														.	.	.	.	.	.																																.	.	.	.
Query SS confidence																														.	.	.	.	.	.																																.	.	.	.
Query Sequence		E	A	W	T	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	M	Y	A	E	T	R	N	M	T	P	.	.	.	.	.	.	Y	G	G	G	E	F	D	N	G	E	S	R	S	A	I	A	N	K	T	Q	N	F	E	V	V	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R	P	S	I	A	Y	L	Q
Query Conservation																														.	.	.	.	.	.																																.	.	.	.
Alig confidence																														.	.	.	.	.	.																																.	.	.	.
Template Conservation
Template Sequence		R	A	F	G	A	L	F	S	L	R	L	G	A	H	A	V	A	A	G	Y	Q	R	I	S	G	D	D	P	Y	P	Y	I	A	G	S	D	P	Y	L	V	N	F	I	Q	I	G	D	F	G	N	V	D	E	R	S	W	Q	L	R	Y	D	Y	D	F	G	A	L	G	L	P	G	L	S	F	M	S	R	Y	V	S
Template Known Secondary structure													T	T												S	S	S					B	T	T	S					T	T			S	S					S	T	T													T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		S	K	G	K	D	L	G	G	W	A	H	D	G	N	G	D	P	R	Y	T	N	K	D	L	V	K	Y	V	D	I	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	N	D	D	D	F	Y	E	A	N	G	I	A	T	D	D	I	V	A	V	G	L	V	Y	Q
Query Conservation																																							.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.															.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template Sequence		G	D	N	V	A	R	G	A	A	N	D	G	.	.	.	.	.	.	.	.	.	.	.	K	E	W	E	R	N	T	D	L	G	Y	V	V	Q	S	G	P	L	K	N	L	G	V	K	W	R	N	A	T	V	R	S	N	F	A	N	D	L	.	.	.	.	.	.	.	.	.	D	E	N	R	L	I	L	S	Y	S
Template Known Secondary structure								T	T					.	.	.	.	.	.	.	.	.	.	.															S	S	T	T	T	T													S	S	S				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.												.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370										.	.	.	.	.	.	.	.	.	380
		397
Predicted Secondary structure
Query SS confidence
Query Sequence		F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		381

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions