Job Description P76335 Confidence 96.66% Date Thu Jan 5 12:21:55 GMT 2012 Rank 28 Aligned Residues 320 % Identity 12% Template c2y0hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl Resolution 2.20 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		D	G	N	K	L	D	L	Y	G	K	V	V	G	L	H	Y	F	S	D	D	S	G	S	D	G	D	M	S	Y	A	R	I	G	F	K	.	.	.	G	E	T	Q	I	A	D	Q	F	T	G	Y	G	Q	W	E	F	N	I	G	A	N	G	P	E	S	D	K	G	N	T	A	T	R	L	A	F	A	G	L	G	F
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.																												.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		A	D	S	S	A	H	L	D	L	R	N	F	Y	Q	L	R	D	Y	R	Q	S	Q	A	G	N	W	S	Q	G	F	V	L	R	L	Q	S	G	F	T	G	G	P	L	G	F	G	L	D	A	T	G	L	L	G	V	K	L	P	V	D	D	Y	S	H	L	.	.	.	.	.	.	.	G	L	T	A	K	L	R	Y
Template Known Secondary structure		T	T																																						S	S	S																								.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.								.	70	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	N	G	T	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	E	A	W	T	D	M	L	P	E	F	G	G	D	T	Y	A	G	A	D	N	F	M	N	G	R	A	N	G	V	A	T	Y	R	N	N	G	F	F	G	L	V	D	G	L	N	F	A	L	Q	Y	Q	G	N	N	E	S	G	G	P	F	G	Q
Query Conservation
Alig confidence					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.
Template Conservation					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.
Template Sequence		S	Q	T	.	Q	L	Q	V	G	I	L	M	P	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	A	F	R	D	D	V	R	L	L	P	Q	T	F	D	G	A	L	L	T	S	S	E	I	E	G	L	T	L	T	A	G	Q	L	W	K	S	R	T	R	E	S	D	D	M	.	.	.	.
Template Known Secondary structure		T	T		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T						S	S	S	S														S	T	T																			B	.	.	.	.
Template Predicted Secondary structure					.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.	.	.	.
Template SS confidence
		102	.	.		.	.	.	.	.	110	.	.	.	.	.																.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	S	G	S	G	D	G	R	S	L	S	K	E	N	G	D	G	F	G	M	S	T	S	Y	D	F	D	F	G	L	S	L	G	A	A	Y	X	N	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	D	R	Q	V	G	V	G	L	N	D	R	N	H	S	N	R	N	A
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	Y	I	M	G	R	D	K	A	H	A	S	D	E	F	N	L	A	G	A	T	Y	A	F	T	P	R	L	S	A	S	Y	Y	Y	G	Q	L	K	D	I	Y	R	Q	H	Y	L	G	L	L	H	T	L	P	L	G	E	G	L	S	L	R	S	D	L	R	Y	F	D	S	G	E	D	G	A	A	I	S
Template Known Secondary structure		.	.	.	.		B	T	T	S		T	T	S		B	S											S	S	S	S											T	T	T															S	T	T																T	T		T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.								.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.													.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.													.	.	.	.
Query Sequence		G	G	E	T	A	E	A	W	T	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	M	Y	A	E	T	R	N	M	T	P	Y	G	G	G	E	F	D	N	G	E	S	R	S	A	I	A	N	K	T	.	.	.	.	.	.	.	Q	N	F	E	V	V	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R	P
Query Conservation																																																						.	.	.	.	.	.	.													.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		G	P	V	D	N	R	N	L	N	A	M	L	T	L	R	A	G	A	H	A	F	G	I	G	V	Q	K	M	I	G	N	D	A	F	P	V	L	N	G	Y	T	T	P	Y	V	A	N	L	M	A	Y	Q	T	F	T	R	P	Q	E	K	S	W	Q	L	R	Y	D	Y	D	F	A	G	L	G	L	P	G	L	N	L
Template Known Secondary structure																		T	T												S	S	S					B	T	T	T		B				T	T			S	S			S		S	T	T													T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		S	I	A	Y	L	Q	S	K	G	K	D	L	G	G	W	A	H	D	G	N	G	D	P	R	Y	T	N	K	D	L	V	K	Y	V	D	I	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	N	D	D	D	F	Y	E	A	N	G	I	A	T	D	D	I	V	A
Query Conservation																																													.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.																						.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Sequence		M	T	R	Y	V	Q	G	R	D	I	D	R	.	.	.	.	.	.	.	.	.	.	G	A	G	R	A	D	D	S	E	W	E	R	N	T	D	L	S	Y	V	I	Q	S	G	P	L	K	S	V	A	L	K	W	R	N	I	T	Y	R	S	R	Y	G	A	D	L	.	.	.	.	.	.	.	.	.	D	E	N	R
Template Known Secondary structure														.	.	.	.	.	.	.	.	.	.	S	T	T																			S	S	T	T	T	T													S	S	S				.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.											.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.										.	.	380	.
		391	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	L	V	Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	V	N	Y	T	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		382	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions