Job Description P76335 Confidence 87.28% Date Thu Jan 5 12:21:55 GMT 2012 Rank 40 Aligned Residues 174 % Identity 11% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure											.	.	.																																																								.
Query SS confidence											.	.	.																																																								.
Query Sequence		G	D	G	F	G	M	S	T	S	.	.	.	Y	D	F	D	F	G	L	S	L	G	A	A	Y	X	N	S	D	R	S	D	R	Q	V	G	V	G	L	N	D	R	N	H	S	N	R	N	A	G	G	E	T	A	E	A	W	T	V	G	A	K	Y	D	A	N	N	.	V	Y	L	A	A	M	Y	A	E	T	R	N
Query Conservation											.	.	.																																																								.
Alig confidence											.	.	.																																					.	.	.	.	.															.
Template Conservation																																																		.	.	.	.	.
Template Sequence		Q	N	G	W	W	A	S	M	E	S	N	T	W	N	T	I	N	D	V	Q	V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	S	N	G	T	.	.	.	.	.	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	L	N	F	G	I	R	Y	R	Y	D	W	K
Template Known Secondary structure		T	T	S																										S	S	S	S													T	T			.	.	.	.	.													S	S	S
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	P	Y	G	G	G	E	F	D	N	G	E	S	R	S	A	I	A	N	K	T	Q	N	F	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	I	A	Y	L	Q	S	K	G	K	D	L	G	G	W	A	H	D	G	N	G	D	P	R	Y	T	N	K	D	L	V	K	Y	V	D	I	G	A	T	Y	Y
Query Conservation
Alig confidence			.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Sequence		A	.	.	.	.	.	.	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D	G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	.	.	.	.	.	.	.	.	.	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H
Template Known Secondary structure		S	.	.	.	.	.	.	S					T	T	S																			S	S	S													S	S	S		.	.	.	.	.	.	.	.	.			T	T	S	S	S
Template Predicted Secondary structure			.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		112							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.										.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	N	D	D	D	F	Y	E	A	N	G	I	A	T	D	D	I	V	A	V	G	L	V	Y	Q
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	N	L	.	.	.	S	E	N	S	Y	R	I	G	V	S	F	K
Template Known Secondary structure		S	B	T	T												S					T	T					.	.	.
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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