Job Description P76335 Confidence 96.24% Date Thu Jan 5 12:21:55 GMT 2012 Rank 31 Aligned Residues 318 % Identity 15% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.				.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		D	L	Y	G	K	V	V	G	L	H	Y	F	S	D	D	S	G	S	D	G	D	M	S	Y	A	R	I	G	F	K	G	E	T	.	.	.	Q	I	A	D	Q	F	T	G	Y	G	Q	W	E	F	N	I	G	A	N	G	P	E	S	D	K	G	N	T	A	T	R	L	A	F	A	G	L	G	F	G	Q	N	G	T
Query Conservation																																			.	.	.
Alig confidence																	.																		.	.	.																									.	.	.	.	.	.	.												.
Template Conservation																	.																																													.	.	.	.	.	.	.												.
Template Sequence		S	L	D	L	L	L	R	N	Y	Y	F	N	R	D	G	.	K	R	V	D	W	T	Q	G	F	L	T	T	Y	E	S	G	F	T	Q	G	T	V	G	F	G	V	D	A	F	G	Y	L	G	L	K	L	D	G	T	D	Y	S	R	A	.	.	.	.	.	.	.	G	G	A	V	K	V	R	I	S	K	T	.	X
Template Known Secondary structure																	.																			S	S	S																								.	.	.	.	.	.	.									T	T		.
Template Predicted Secondary structure																	.																																													.	.	.	.	.	.	.												.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.								.	.	.	80	.	.	.	.	.	.	.		.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	Y	G	R	N	Y	G	V	V	Y	D	V	E	A	W	T	D	M	L	P	E	F	G	G	D	T	Y	A	G	A	D	N	F	M	N	G	R	A	N	G	V	A	T	Y	R	N	N	G	F	F	G	L	V	D	G	L	N	F	A	L	Q	Y	Q	G	N	N	E	S	G	G	P	F	G	Q	E	G	S	G	S
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	W	G	E	X	Q	P	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	F	A	A	G	G	S	R	L	F	P	Q	T	A	T	G	F	Q	L	Q	S	S	E	F	.	.	.	.	.	E	G	L	D	L	E	A	G	H	F	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Template Known Secondary structure											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	B						S	S	S														S	.	.	.	.	.	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.															.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.														160
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	G	R	S	L	S	K	E	N	G	D	G	F	G	M	S	T	S	Y	D	F	D	F	G	L	S	L	G	A	A	Y	X	N	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	D	R	Q	V	G	V	G	L	N	D	R	N	H	S	N	R	N	A	G	G	E	T	A
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Y	A	T	Y	A	G	E	T	A	K	S	A	D	F	I	G	G	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	E	L	E	D	I	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	A	K	A	G	D	I	S	N
Template Known Secondary structure					T	T	T					S											S	S	S	S											T	T	T																T	T																T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.							.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																								.	.	.	.	.	.																					.	.	.	.
Query SS confidence																																								.	.	.	.	.	.																					.	.	.	.
Query Sequence		E	A	W	T	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	M	Y	A	E	T	R	N	M	T	P	Y	G	G	G	E	F	D	N	G	E	.	.	.	.	.	.	S	R	S	A	I	A	N	K	T	Q	N	F	E	V	V	A	Q	Y	Q	F	.	.	.	.	D	F	G	L	R	P	S	I	A	Y	L	Q
Query Conservation																																								.	.	.	.	.	.																					.	.	.	.
Alig confidence																																								.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		T	T	W	S	L	A	A	A	Y	T	L	D	A	H	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q	A	R	Y	D	L	N	L	A	S	Y	G	V	P	G	L	T	F	X	V	R	Y	I	N
Template Known Secondary structure													T	T												S	S	S											S	S	T	T			S	S						T	T												T	T	S	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		321	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.					.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure										.	.																														.	.	.	.
Query SS confidence										.	.																														.	.	.	.
Query Sequence		S	K	G	K	D	L	G	G	.	.	W	A	H	D	G	N	G	D	P	R	Y	T	N	K	D	L	V	K	Y	V	D	I	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	N	D	D	D	F	Y	E	A	N	G	I	A	T	D	D	I	V	A	V	G	L	V
Query Conservation										.	.																														.	.	.	.
Alig confidence										.	.																														.	.	.	.																		.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.
Template Sequence		G	K	D	I	D	G	T	K	X	S	D	N	N	V	G	Y	K	N	Y	G	Y	G	E	D	G	K	H	H	E	T	N	L	E	A	K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	R	Q	A	W	H	R	A	N	A	D	.	.	.	.	.	.	Q	G	E	G	D	Q	N	E	F	R	L	I	V	D
Template Known Secondary structure								T	T			S	S		T	T	T	S	S	S				S	S																S	S	T	T	T	T														T	T	.	.	.	.	.	.	T	S	S		S	B
Template Predicted Secondary structure																																																														.	.	.	.	.	.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400							.	.	.	.	.	.	.	.	.	410	.	.	.	.
		395	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	P	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		415	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions