Job Description P33358 Confidence 50.73% Date Thu Jan 5 11:51:59 GMT 2012 Rank 291 Aligned Residues 127 % Identity 15% Template d1ulya_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Hypothetical protein PH1932 Resolution 2.50

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.		.	.	.	40	.																									.	.	.	.	.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure																									.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	T	I	G	E	V	A	L	L	C	D	I	N	P	V	T	L	R	A	W	Q	R	R	.	.	.	Y	G	L	L	K	P	Q	R	T	D	.	G	G	H	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	N	D	A	D	I	D	R	I	R	E	I	K	R
Query Conservation																									.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.											.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	T	I	S	Q	L	S	E	I	L	G	K	T	P	Q	T	I	Y	H	H	I	E	K	L	K	E	A	G	L	V	E	V	K	R	T	E	X	K	G	N	L	V	E	K	Y	Y	G	R	T	A	D	V	F	Y	I	N	L	Y	L	G	D	E	E	L	R	Y	I	A	R	S	R	L	K	T	K	I	D	I	F	K
Template Known Secondary structure		B										T																T	T	S										T	T									S	S	S						S		S	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	D	N	G	V	Q	V	S	K	V	K	M	L	L	S	N	E	N	V	D	V	Q	N	G	W	R	D	Q	Q	E	T	L	L	T	Y	L	Q	S	G	N	L	H	S	L	R	T	W	I	K	E	R	G	Q	D	Y	P	A	Q	T	L	T	T	H	L	F	I	P	L	R	R	R	L	Q	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	G	Y	Q	F	E	E	N	E	L	L	N	I	X	D	R	X	S	Q	K	E	F	D	A	T	V	R	I	S	K	Y	I	E	E	K	E	D	A	L	K	D	F	S	N	E	D	I	I	H	A	I	E	W	L	S	T	A	E	L	A	R	D	E	E	Y	L	E	L	L	K	R	L	G	S
Template Known Secondary structure			T	T																																	T	G	G	G	G	T	T	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions