Job Description P33358 Confidence 79.33% Date Thu Jan 5 11:51:59 GMT 2012 Rank 63 Aligned Residues 87 % Identity 14% Template c3ivpD_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. Resolution 2.02 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	I	G	E	V	A	L	L	C	D	I	N	P	V	T	L	R	A	W	Q	R	R	Y	G	L	L	K	P	Q	R	T	D	G	G	H	R	L	F	N	D	A	D	I	D	R	I	R	E	I	K	R	W	I	D	N	G	V	Q	V	S	K	V	K	M	L	L	S	N	E	N	V	D	V	Q	N	G	W	R	D
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.							.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.							.	.	.
Template Sequence		L	T	R	E	Q	V	G	A	X	I	E	I	D	P	R	Y	L	T	N	I	E	N	.	.	.	.	.	.	.	.	.	.	.	.	K	G	Q	H	P	S	L	Q	V	L	Y	D	L	V	S	L	L	.	.	.	.	.	N	V	S	V	D	E	.	.	.	F	F	L	P	A	S	S	Q	V	K	S	T	K	R	R
Template Known Secondary structure												T	S											.	.	.	.	.	.	.	.	.	.	.	.	S																	.	.	.	.	.	T			S			.	.	.			S		T	T	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.							.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.													.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	E	T	L	L	T	Y	L	Q	S	G	N	L	H	S	L	R	T	W	I	K	E	R	G	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	E	N	K	I	D	N	F	T	D	A	D	L	V	I	X	E	S	V	A	D	G	I	V	K	S
Template Known Secondary structure							G	G	G
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions