Job Description P37681 Confidence 39.09% Date Thu Jan 5 11:56:55 GMT 2012 Rank 37 Aligned Residues 170 % Identity 11% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence		D	T	F	Y	V	R	Q	T	T	L	G	F	I	L	S	Q	S	E	K	N	E	L	S	L	T	A	S	W	M	P	L	E	F	D	P	T	D	N	D	D	Y	A	M	Q	Q	L	D	K	R	D	S	T	A	M	A	G	V	A	W	Y	H	H	E	R	W	G	T	V	K	A	S	A	A	A	.	.	.	.	.	D
Query Conservation																																																																												.	.	.	.	.
Alig confidence															.																																																													.	.	.	.	.
Template Conservation															.
Template Sequence		D	P	E	K	S	K	Q	W	E	G	A	F	E	.	G	L	T	A	G	V	N	W	R	I	S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	K	A	R	I	K	G	V	E	A	T	A	N	F	D	T	G	P	L	T	H	T	V	S	Y	D	Y	V	D	A	R	N	A
Template Known Secondary structure															.				T	T																				T	T	T	T																						T	T															T
Template Predicted Secondary structure															.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	D	N	S	N	G	W	V	G	E	L	S	V	F	H	K	M	Q	I	G	R	L	S	L	T	P	A	L	G	V	L	Y	Y	D	E	N	F	S	D	Y	Y	Y	G	I	S	E	S	E	S	R	R	S	G	L	A	S	Y	S	A	Q	D	A	W	V	P	Y	V	S	L	T	A	K	Y	P	I	G	E	H	V
Query Conservation
Alig confidence																																																				.	.	.						.	.	.	.	.	.	.
Template Conservation																																																				.	.	.						.	.	.	.	.	.	.
Template Sequence		I	T	D	T	P	L	L	R	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	L	Y	D	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T	V	.	.	.	K	M	G	G	V	.	.	.	.	.	.	.	S	L	W	D	L	A	V	A	Y	P	V	T	S	H	L
Template Known Secondary structure		T	T			B		T	T			S												T	T																			S	S	S	S					.	.	.						.	.	.	.	.	.	.											S	S	S	S
Template Predicted Secondary structure																																																				.	.	.						.	.	.	.	.	.	.
Template SS confidence
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.				540	.	.	.	.								.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		V	L	M	A	S	A	G	Y	S	E	L	P	E	E	I	T	D	S	P	M	I	D	R	N	E	S	F	.	T	F	V	T	G	V	S	W	R	F
Query Conservation																													.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	R	G	K	I	A	N	.	.	.	.	.	.	.	.	.	.	.	L	F	D	K	D	Y	A	G	R	E	Y	T	L	S	G	S	Y	T	F
Template Known Secondary structure									S	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		560	.	.	.	.	.	.	.												.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions