Job Description P37681 Confidence 92.63% Date Thu Jan 5 11:56:55 GMT 2012 Rank 20 Aligned Residues 169 % Identity 10% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure															.	.	.																																															.																.	.
Query SS confidence															.	.	.																																															.																.	.
Query Sequence		Q	T	T	L	G	F	I	L	S	Q	S	E	K	.	.	.	N	E	L	S	L	T	A	S	W	M	P	L	E	F	D	P	T	D	N	D	D	Y	A	M	Q	Q	L	D	K	R	D	S	T	A	M	A	G	V	A	W	Y	H	H	E	R	W	.	G	T	V	K	A	S	A	A	A	D	V	L	D	N	S	.	.
Query Conservation															.	.	.																																															.																.	.
Alig confidence															.	.	.																						.	.	.	.	.	.	.																			.																.	.
Template Conservation																																							.	.	.	.	.	.	.
Template Sequence		G	L	E	I	G	L	D	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	P	G	D	G	G	.	.	.	.	.	.	.	G	K	V	K	G	L	H	V	G	G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N
Template Known Secondary structure														T	T																		B	T	T	T	B		.	.	.	.	.	.	.																	S	S	S	B
Template Predicted Secondary structure																																							.	.	.	.	.	.	.
Template SS confidence
		774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810								.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.
																	135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																																												.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																																												.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	W	V	G	E	L	S	V	F	H	K	M	Q	I	G	.	R	L	S	L	T	P	A	L	G	V	L	Y	Y	D	E	N	F	S	D	Y	Y	Y	G	I	S	E	S	E	S	R	R	S	G	L	A	S	Y	S	A	Q	D	A	W	.	V	P	Y	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																																												.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																					.	.	.	.	.	.																		.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	.	.	.	.	.	.	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L
Template Known Secondary structure					S	S	S																				B					G	G	G																				.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		847	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.							.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	T	A	K	Y	P	I	G	E	H	V	V	L	M	A	S	A	G	Y	S	E	L	P	E	E	I	T	D	S	P	M	I	D	R	N	E	S	F	T	F	V	T	G	V	S	W	R	F
Query Conservation
Alig confidence																									.								.	.	.
Template Conservation																									.								.	.	.
Template Sequence		R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	.	Q	E	F	K	S	T	G	.	.	.	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L
Template Known Secondary structure										T	T	S													.								.	.	.		B
Template Predicted Secondary structure																									.								.	.	.
Template SS confidence
		921	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.		.	.	.	.	.	.	950				.	.	.	.	.	.	.	.	.	960	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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