Job Description P37681 Confidence 97.57% Date Thu Jan 5 11:56:55 GMT 2012 Rank 9 Aligned Residues 144 % Identity 15% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																				.												.	.
Query SS confidence																																																				.												.	.
Query Sequence		L	S	Q	S	E	K	N	E	L	S	L	T	A	S	W	M	P	L	E	F	D	P	T	D	N	D	D	Y	A	M	Q	Q	L	D	K	R	D	S	T	A	M	A	G	V	A	W	Y	H	H	E	.	R	W	G	T	V	K	A	S	A	A	A	.	.	D	V	L	D	N	S	N	G	W	V	G	E	L	S	V	F
Query Conservation																																																				.												.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.												.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	P	K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	R	K	A	Q	G	V	Q	L	T	A	K	L	G
Template Known Secondary structure					S	S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S													S	S	S												S	S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.																	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		145	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure								.																																																												.	.
Query SS confidence								.																																																												.	.
Query Sequence		H	K	M	Q	I	G	.	R	L	S	L	T	P	A	L	G	V	L	Y	Y	D	E	N	F	S	D	Y	Y	Y	G	I	S	E	S	E	S	R	R	S	G	L	A	S	Y	S	A	Q	D	A	W	V	P	Y	V	S	L	T	A	K	Y	P	I	G	E	H	V	.	.	V	L	M	A	S	A	G	Y	S	E	L	P
Query Conservation								.																																																												.	.
Alig confidence								.																	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	P	K	L	G	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	.	.	.	.	.	.	.	.	.	.	T	S	D	K	D	G	N	G	Y	I	S	A	A	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N
Template Known Secondary structure				T	T		T	T	T													S	S	B	.	.	.	.	.	.	.	.	.	.						S	S	S						B																S	S	S		S	S	S											S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.											.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	I	T	D	S	P	M	I	D	R	N	E	S	F	T	F	V	T	G	V	S	W	R	F
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		N	A	S	.	.	.	.	.	.	.	.	.	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure		S	S	S	.	.	.	.	.	.	.	.	.													S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.										.	.	140	.	.	.	.	.	.	.	.	.	150

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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