|   |
16 | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
. | 40 | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | R | E | L | T | A | L | D | N | L | D | F | G | S | L | H | L | D | I | E | D | S | S | . |
F | I | N | N | I | T | F | . |
. |
. |
. |
. |
. |
. |
G | M | K | T | V | Q | A | V | A | R | Q | T | P | H | P | L | S | F | H | F | M | L | A | R | P | Q | R | W | F | N | A | L | A | E | I | R | P | A | W | I | F | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|   |   |
|   |   | . |
|   |   |   |   |   |   | . | . | . | . | . | . | . |
|   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |
|   |   |   |
|
|
|   |
|
|   |
|   |   |   |   |   |   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|
| . | . |   |   |
|   |   |   | . |   |   |   |
|   |   |   | . |
|   |   |   |
|
|
Template Sequence |   |
E | H | Y | V | T | V | T | Q | K | L | G | I | P | Y | V | F | K | A | S | F | D | K | A | N | R | S | S | I | H | S | Y | R | G | P | G | L | E | E | G | M | K | I | F | Q | E | L | K | Q | T | F | G | V | K | I | I | T | D | . |
. |
V | H | E | P | S | Q | . |
A | Q | P | V | A | D | V | . |
V | D | V | I | Q | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  | S |
|
| T | T |
| S | S | T | T | S |
|
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  | . | . |
|
| S | G | G | G | . |  |  |  |  |  | T | T | . |
| S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . |
|
|
|  |  |  | . |  |  |  |  |  |  |  | . |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1039 | 1040 | . | . | . | . | . | . | . | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | . | . | . | . | . | . | . | 1090 | . | . | . | . | . | |
|
. | . | . | . | 1100 | . | |
. | . | . | . | . | . | . | |
. | 1110 | . | . | . | . |
  |
  |   |
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
|
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | A | E | T | L | D | Y | P | S | E | T | L | T | E | I | R | H | T | G | A | R | A | G | L | V | F | N | P | A | T | P | . |
. |
. |
. |
I | D | A | W | R | Y | L | A | S | E | L | D | G | V | M | V | M | T | S | E | P | D | G | Q | G | Q | R | F | I | P | S | M | C | E | K | I | Q | K | V | R | T | A | F | P | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   | . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |
|   |   | . |
|
|   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
P | A | F | L | A | R | Q | T | D | . |
L | V | E | A | M | A | K | T | G | A | V | I | N | V | K | K | P | Q | F | V | S | P | G | Q | M | G | N | I | V | D | K | F | K | E | G | G | N | E | K | V | I | L | C | D | R | G | A | N | F | G | Y | D | N | L | V | V | D | M | L | G | F | S | I | M | K | K | V | S | G | N |
Template Known Secondary structure |   |
| G | G | G | T | T |
|  |  | . |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
| T | T | S |
| G | G | G |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
|
|  |  |
| S | S | S |
|  |  |
|
| T | T |  |  |  |  |  |  |  |  | T | T | S |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|  |  | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1115 | . | . | . | . | 1120 | . | . | . | |
. | . | . | . | . | . | 1130 | . | . | . | . | . | . | . | . | . | 1140 | . | . | . | . | . | . | . | . | . | 1150 | . | . | . | . | . | . | . | . | . | 1160 | . | . | . | . | . | . | . | . | . | 1170 | . | . | . | . | . | . | . | . | . | 1180 | . | . | . | . | . | . | . | . | . | 1190 | . | . | . |
  |
  |   |
164 | . | . | . | . | . | |
|
|
|
170 | . | . | . | |
|
. | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
Predicted Secondary structure |   |
|  |  |  |  |  | . | . | . | . |
|
|
|
| . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | E | C | W | A | D | . |
. |
. |
. |
G | G | I | T | . |
. |
L | A | A | A | Q | Q | L | A | A | A | G | A | Q | H | M | V | I |
Query Conservation |   |
  |   |
|   |   |   | . | . | . | . |
|
|
|   | . | . |   |
|   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
| . | . | . | . |
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|
|   |
|   |
|
|
Template Sequence |   |
S | P | V | I | F | D | V | T | H | A | L | Q | R | A | Q | V | A | E | L | A | R | A | G | M | A | V | G | L | A | G | L | F | I |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1194 | . | . | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | 1210 | . | . | . | . | . | . | . | . | . | 1220 | . | . | . | . | . | . |
  |