Job Description P39362 Confidence 94.48% Date Thu Jan 5 11:59:53 GMT 2012 Rank 340 Aligned Residues 202 % Identity 17% Template d1bxna1 SCOP info TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Resolution 2.70

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.										.	.	.																											.	.	.	.	.
Query SS confidence																												.	.										.	.	.																											.	.	.	.	.
Query Sequence		A	S	A	N	P	L	H	Y	G	R	E	L	T	A	L	D	N	L	D	F	G	S	L	H	L	D	.	.	I	E	D	S	S	F	I	N	N	.	.	.	I	T	F	G	M	K	T	V	Q	A	V	A	R	Q	T	P	H	P	L	S	F	H	F	M	L	A	.	.	.	.	.	R	P	Q	R	W	F	N	A	L
Query Conservation																												.	.										.	.	.																											.	.	.	.	.
Alig confidence																												.	.										.	.	.																											.	.	.	.	.
Template Conservation
Template Sequence		L	G	L	S	G	R	N	Y	G	R	V	V	Y	E	G	L	K	G	G	L	D	F	M	K	D	D	E	N	I	N	S	Q	P	F	M	H	W	R	D	R	F	L	F	V	M	D	A	V	N	K	A	S	A	A	T	G	E	V	K	G	S	Y	L	N	V	T	A	G	T	M	E	E	M	Y	R	R	A	E	F	A
Template Known Secondary structure		T	T																T	T		S						T	T		S	S		T	T	S																					T	S											S	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		78	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																.																														.	.	.	.	.	.	.	.	.
Query SS confidence																.																														.	.	.	.	.	.	.	.	.
Query Sequence		A	E	I	R	P	A	W	I	F	V	H	A	E	T	.	L	D	Y	P	S	E	T	L	T	E	I	R	H	T	G	A	R	A	G	L	V	F	N	P	A	T	P	I	D	.	.	.	.	.	.	.	.	.	A	W	R	Y	L	A	S	E	L	D	G	V	M	V	M	T	S	E	P	D	G	Q	G	Q	R	F	I
Query Conservation																.																														.	.	.	.	.	.	.	.	.
Alig confidence																.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	S	L	G	S	V	I	I	M	V	D	L	I	V	G	W	T	C	I	Q	S	M	S	N	W	C	R	Q	N	D	M	I	L	H	L	H	R	A	G	H	G	T	Y	T	R	Q	K	N	H	G	V	S	F	R	V	I	A	K	W	L	R	L	A	G	V	D	H	M	H	T	G	T	A	V	G	K	L	E	G	D
Template Known Secondary structure				T	T		S						G	G	G														T	T	T								T	T	T					S		T	T	S	S														T		S							T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		148	.	150	.	.	.	.	.	.	.	.	.																				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.						.														.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.						.														.
Query Sequence		P	S	M	C	E	K	I	Q	K	V	R	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	P	Q	T	E	C	W	A	D	G	G	I	T	L	A	A	A	Q	Q	L	A	.	A	A	G	A	Q	.	H	M	V	I	G	R	A	L	F	S	S	S	D	.	Y	R	A	T	L	A
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.						.														.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.						.														.
Template Conservation
Template Sequence		P	L	T	V	Q	G	Y	Y	N	V	C	R	D	A	Y	T	Q	T	D	L	T	R	G	L	F	F	D	Q	D	W	A	S	L	R	K	V	M	P	V	A	S	G	G	I	H	A	G	Q	M	H	Q	L	I	H	L	F	G	D	D	V	V	L	Q	F	G	G	G	T	I	G	H	P	Q	G	I	Q	A	G	A	T
Template Known Secondary structure															S					B	G	G	G	T	B		S					T	T											S			G	G	G										S	S											T		T	T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		206	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	R	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions